#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005443-DNA_E05.hs38DH/LP6005443-DNA_E05.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005443-DNA_E05.hs38DH/QCmetrics/LP6005443-DNA_E05.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 25.483 26.742 21 4 0 0.022986 0.0016044 0.046757 0.0067358 0.15487 0.23296 0.99864 0.9943 0.97495 0.87553 0.60843 0.29552 0.12352 0.051976 0.039741 0.033194 0.029015 0.025789 0.022845 0.019862 0.99498 23 coverage high_quality_coverage_count 0 32070 1 21854 2 22518 3 26507 4 31705 5 41439 6 57499 7 79765 8 113413 9 165314 10 236533 11 326709 12 443971 13 587703 14 754924 15 936890 16 1119215 17 1286191 18 1433907 19 1537200 20 1587258 21 1582363 22 1523746 23 1419179 24 1283544 25 1127087 26 960906 27 802030 28 654382 29 520963 30 408242 31 316668 32 244905 33 187804 34 145955 35 113931 36 89795 37 73289 38 59657 39 50803 40 43800 41 38235 42 34488 43 31039 44 28449 45 26039 46 23877 47 22210 48 21182 49 19874 50 19092 51 18130 52 17111 53 16286 54 15807 55 15298 56 14317 57 13665 58 12888 59 12145 60 11493 61 11068 62 10771 63 10218 64 10030 65 9575 66 9368 67 9008 68 8667 69 8582 70 8377 71 8235 72 7878 73 7767 74 7514 75 7536 76 7506 77 7168 78 7167 79 7103 80 7017 81 6875 82 6840 83 6937 84 6878 85 6967 86 6812 87 7105 88 7125 89 7018 90 7047 91 7097 92 6972 93 6910 94 7015 95 7085 96 7058 97 7067 98 7185 99 7075 100 7131 101 7192 102 7004 103 7026 104 6812 105 6650 106 6520 107 6430 108 6254 109 6021 110 5779 111 5598 112 5166 113 4878 114 4651 115 4494 116 4138 117 3962 118 3772 119 3504 120 3367 121 3261 122 3064 123 3007 124 2929 125 2661 126 2547 127 2456 128 2264 129 2238 130 2196 131 2184 132 2108 133 1969 134 1869 135 1870 136 1734 137 1740 138 1604 139 1568 140 1510 141 1477 142 1451 143 1501 144 1397 145 1363 146 1345 147 1424 148 1319 149 1307 150 1261 151 1268 152 1200 153 1188 154 1164 155 1212 156 1141 157 1162 158 1081 159 1065 160 1125 161 1102 162 1121 163 1045 164 1020 165 1107 166 1002 167 1053 168 1020 169 989 170 985 171 974 172 908 173 956 174 996 175 889 176 1005 177 944 178 902 179 919 180 941 181 957 182 968 183 1013 184 991 185 940 186 983 187 996 188 952 189 896 190 1004 191 954 192 940 193 943 194 999 195 1050 196 940 197 1014 198 989 199 964 200 1038 201 962 202 923 203 960 204 929 205 945 206 973 207 914 208 922 209 904 210 861 211 936 212 857 213 907 214 892 215 877 216 914 217 766 218 859 219 831 220 804 221 795 222 822 223 692 224 739 225 717 226 717 227 698 228 717 229 738 230 709 231 722 232 692 233 653 234 690 235 640 236 689 237 706 238 632 239 666 240 679 241 657 242 673 243 691 244 732 245 745 246 634 247 652 248 644 249 628 250 205380