#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005443-DNA_F02.hs38DH/LP6005443-DNA_F02.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005443-DNA_F02.hs38DH/QCmetrics/LP6005443-DNA_F02.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 23.045 26.029 19 4 0 0.091695 0.0011804 0.022907 0.0063813 0.39847 0.52064 0.99686 0.99288 0.96817 0.80915 0.45777 0.17498 0.07139 0.041674 0.03599 0.031734 0.02744 0.023022 0.019061 0.016413 0.99298 22 coverage high_quality_coverage_count 0 74282 1 23126 2 20719 3 22250 4 27851 5 38978 6 59263 7 94832 8 152288 9 238807 10 360053 11 524064 12 724840 13 951684 14 1197854 15 1418757 16 1603198 17 1728335 18 1787429 19 1767681 20 1675349 21 1532850 22 1354561 23 1159485 24 961952 25 775972 26 607300 27 463620 28 346132 29 255452 30 187387 31 136765 32 99631 33 73690 34 55607 35 42457 36 34030 37 27803 38 24036 39 20959 40 18655 41 16338 42 14879 43 13953 44 12955 45 12163 46 11968 47 11539 48 11074 49 10834 50 10533 51 10324 52 10356 53 10071 54 10062 55 9750 56 9912 57 9814 58 9969 59 9806 60 9804 61 9926 62 9958 63 9886 64 10284 65 10045 66 10199 67 10405 68 10516 69 10466 70 10570 71 10446 72 10320 73 10222 74 10305 75 10482 76 10588 77 10487 78 10723 79 10277 80 10357 81 10218 82 10073 83 9943 84 9463 85 9353 86 9072 87 8444 88 8466 89 8230 90 7827 91 7632 92 7125 93 6892 94 6355 95 6008 96 5704 97 5287 98 5005 99 4771 100 4541 101 4376 102 4236 103 4079 104 3914 105 3590 106 3386 107 3262 108 3166 109 3021 110 2979 111 2736 112 2649 113 2709 114 2432 115 2394 116 2327 117 2313 118 2148 119 2088 120 1972 121 1940 122 1800 123 1866 124 1841 125 1869 126 1709 127 1655 128 1671 129 1577 130 1545 131 1507 132 1427 133 1458 134 1460 135 1410 136 1361 137 1450 138 1458 139 1329 140 1357 141 1391 142 1320 143 1310 144 1224 145 1220 146 1171 147 1164 148 1160 149 1102 150 1122 151 1041 152 1168 153 1060 154 1094 155 1094 156 1066 157 1082 158 1030 159 1007 160 1043 161 1021 162 1045 163 1068 164 1027 165 1040 166 1099 167 1008 168 1109 169 1075 170 1024 171 1027 172 1008 173 992 174 1071 175 1016 176 1005 177 993 178 914 179 962 180 983 181 1010 182 981 183 994 184 996 185 996 186 948 187 931 188 994 189 956 190 870 191 885 192 908 193 869 194 888 195 897 196 905 197 934 198 841 199 908 200 875 201 807 202 821 203 848 204 812 205 766 206 765 207 751 208 674 209 677 210 742 211 670 212 699 213 724 214 763 215 705 216 700 217 699 218 703 219 666 220 651 221 661 222 581 223 579 224 576 225 570 226 564 227 595 228 604 229 606 230 650 231 601 232 595 233 584 234 551 235 538 236 557 237 574 238 557 239 559 240 565 241 559 242 569 243 582 244 549 245 608 246 590 247 588 248 574 249 593 250 198465