#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005443-DNA_F03.hs38DH/LP6005443-DNA_F03.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005443-DNA_F03.hs38DH/QCmetrics/LP6005443-DNA_F03.hs38DH.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	2.8902	19.538	0	0	0	0.053639	0.0039583	0.060318	0.024265	0.398	0.54018	0.14887	0.076482	0.04566	0.031248	0.023729	0.019344	0.016701	0.013591	0.01181	0.010563	0.0096505	0.0089514	0.0083732	0.0078892	0.11121	1	

coverage	high_quality_coverage_count	
0	20117517
1	723111
2	426385
3	312347
4	249239
5	203560
6	166369
7	139285
8	118603
9	100714
10	88598
11	75276
12	66695
13	59288
14	50783
15	44443
16	38953
17	35401
18	31352
19	27579
20	24626
21	22592
22	20755
23	18969
24	16698
25	15255
26	13288
27	11833
28	11387
29	10692
30	10050
31	9241
32	8506
33	7754
34	7188
35	6717
36	6494
37	6267
38	5821
39	5486
40	4964
41	4776
42	4616
43	4345
44	4306
45	4031
46	3975
47	3787
48	3790
49	3503
50	3438
51	3274
52	3189
53	3143
54	3031
55	2873
56	2807
57	2732
58	2517
59	2470
60	2550
61	2432
62	2324
63	2229
64	2141
65	2142
66	2094
67	1960
68	1867
69	1829
70	1865
71	1832
72	1794
73	1709
74	1610
75	1743
76	1613
77	1518
78	1447
79	1393
80	1439
81	1375
82	1446
83	1446
84	1301
85	1271
86	1341
87	1361
88	1331
89	1357
90	1227
91	1246
92	1155
93	1110
94	1113
95	1184
96	1148
97	1109
98	1091
99	1057
100	1024
101	1034
102	999
103	1023
104	1018
105	883
106	935
107	935
108	896
109	890
110	872
111	909
112	887
113	911
114	873
115	897
116	820
117	811
118	846
119	823
120	843
121	761
122	794
123	776
124	778
125	764
126	743
127	750
128	779
129	762
130	811
131	801
132	767
133	765
134	808
135	776
136	792
137	715
138	745
139	731
140	708
141	698
142	689
143	635
144	649
145	667
146	648
147	653
148	668
149	631
150	649
151	642
152	627
153	613
154	686
155	693
156	627
157	621
158	687
159	685
160	663
161	660
162	703
163	722
164	658
165	696
166	695
167	718
168	670
169	728
170	659
171	680
172	675
173	649
174	652
175	654
176	629
177	628
178	646
179	621
180	636
181	649
182	599
183	586
184	619
185	634
186	565
187	620
188	648
189	597
190	579
191	620
192	617
193	665
194	603
195	618
196	652
197	621
198	632
199	638
200	614
201	638
202	631
203	578
204	635
205	609
206	644
207	594
208	609
209	610
210	600
211	661
212	630
213	628
214	642
215	609
216	632
217	654
218	650
219	638
220	637
221	673
222	686
223	596
224	628
225	617
226	594
227	607
228	590
229	596
230	556
231	556
232	611
233	537
234	541
235	580
236	522
237	535
238	526
239	511
240	487
241	477
242	487
243	485
244	461
245	433
246	436
247	433
248	449
249	423
250	84968