#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i SGDP/LP6005443-DNA_F04.hs38DH/LP6005443-DNA_F04.hs38DH.cram --algo AlignmentStat SGDP/LP6005443-DNA_F04.hs38DH/QCmetrics/LP6005443-DNA_F04.hs38DH.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	589051961	589051961	1.000000	0	578969203	0.982883	57465484443	542416946	53941698801	51700304205	0.000000	0.003925	0.003492	0.000188	100.000000	577203756	0.996951	0	0.500028	0.013183	0.000007	
SECOND_OF_PAIR	589051961	589051961	1.000000	0	577376263	0.980179	57214260928	540474311	53691664471	50682639351	0.000000	0.005047	0.004615	0.000186	100.000000	577203756	0.999701	0	0.500039	0.013268	0.000208	
PAIR	1178103922	1178103922	1.000000	0	1156345466	0.981531	114679745371	1082891257	107633363272	102382943556	0.000000	0.004485	0.004053	0.000187	100.000000	1154407512	0.998324	0	0.500033	0.013226	0.000107