#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i SGDP/LP6005443-DNA_F04.hs38DH/LP6005443-DNA_F04.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005443-DNA_F04.hs38DH/QCmetrics/LP6005443-DNA_F04.hs38DH.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 18.661 5.6132 18 3 0 0.0092119 0.001284 0.044786 0.0040656 4.2635e-05 0.05939 0.99834 0.99264 0.96445 0.79456 0.42002 0.12311 0.023304 0.0026941 0.0010375 0.00050647 0.00029435 0.00018999 0.00012946 9.4488e-05 0.99334 22 coverage high_quality_coverage_count 0 253165 1 181527 2 197220 3 220294 4 267528 5 343837 6 476285 7 706577 8 1086864 9 1673620 10 2502087 11 3610340 12 4988537 13 6555655 14 8186462 15 9719047 16 10994030 17 11876720 18 12263840 19 12119051 20 11478603 21 10449070 22 9165972 23 7749537 24 6321954 25 4999098 26 3828593 27 2843487 28 2057528 29 1452948 30 1002777 31 682922 32 464850 33 312345 34 215401 35 149871 36 108700 37 81859 38 63974 39 52348 40 43176 41 36867 42 32034 43 27932 44 24436 45 21688 46 19498 47 17355 48 15307 49 13705 50 12393 51 10997 52 10031 53 8733 54 7860 55 7300 56 6620 57 6135 58 5643 59 5066 60 4730 61 4207 62 3760 63 3448 64 3128 65 2944 66 2699 67 2580 68 2465 69 2306 70 2166 71 1967 72 1780 73 1630 74 1558 75 1447 76 1472 77 1386 78 1269 79 1200 80 1170 81 1062 82 1005 83 947 84 1013 85 902 86 857 87 826 88 739 89 686 90 630 91 596 92 542 93 582 94 490 95 544 96 488 97 486 98 475 99 487 100 485 101 480 102 415 103 368 104 327 105 353 106 357 107 332 108 297 109 317 110 265 111 287 112 248 113 266 114 254 115 242 116 244 117 249 118 222 119 233 120 193 121 191 122 194 123 177 124 155 125 158 126 139 127 160 128 136 129 154 130 138 131 128 132 119 133 131 134 114 135 95 136 105 137 91 138 101 139 119 140 116 141 85 142 105 143 89 144 93 145 102 146 99 147 103 148 89 149 81 150 81 151 85 152 92 153 86 154 89 155 75 156 87 157 78 158 67 159 87 160 67 161 59 162 64 163 53 164 58 165 53 166 60 167 46 168 51 169 67 170 48 171 53 172 42 173 39 174 45 175 51 176 41 177 47 178 48 179 42 180 56 181 46 182 34 183 41 184 55 185 29 186 32 187 37 188 32 189 20 190 24 191 27 192 34 193 26 194 23 195 14 196 30 197 31 198 24 199 32 200 19 201 29 202 24 203 26 204 23 205 23 206 12 207 24 208 16 209 21 210 23 211 20 212 21 213 22 214 24 215 19 216 19 217 22 218 22 219 20 220 19 221 25 222 24 223 14 224 22 225 18 226 16 227 14 228 13 229 16 230 15 231 19 232 11 233 12 234 10 235 13 236 20 237 15 238 21 239 21 240 13 241 14 242 9 243 10 244 10 245 13 246 15 247 19 248 18 249 13 250 963