#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005443-DNA_F04.hs38DH/LP6005443-DNA_F04.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005443-DNA_F04.hs38DH/QCmetrics/LP6005443-DNA_F04.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 24.046 25.007 20 4 0 0.020254 0.0014049 0.041134 0.0067285 0.17772 0.24724 0.99864 0.99408 0.97225 0.83748 0.52378 0.24749 0.12261 0.053944 0.035751 0.027124 0.021037 0.017341 0.015423 0.014315 0.99462 23 coverage high_quality_coverage_count 0 32250 1 22416 2 24225 3 27539 4 33406 5 41719 6 57139 7 84793 8 130483 9 201988 10 305717 11 438095 12 609232 13 808278 14 1024044 15 1228353 16 1407162 17 1539775 18 1616628 19 1622858 20 1566139 21 1466594 22 1328936 23 1165932 24 1002989 25 841030 26 695954 27 570452 28 465714 29 378391 30 311320 31 258077 32 214784 33 180522 34 153263 35 131947 36 113661 37 98149 38 85882 39 75489 40 67185 41 59368 42 52584 43 47001 44 42377 45 37912 46 34750 47 31818 48 29560 49 27462 50 25425 51 23671 52 22543 53 21467 54 20249 55 19616 56 18454 57 17895 58 17553 59 17021 60 16616 61 16389 62 16046 63 15438 64 14509 65 14172 66 13676 67 13031 68 12330 69 11668 70 11120 71 10366 72 9930 73 9541 74 9177 75 8496 76 7910 77 7424 78 6915 79 6492 80 5939 81 5813 82 5351 83 4891 84 4524 85 4166 86 3985 87 3805 88 3531 89 3322 90 3209 91 2956 92 2841 93 2710 94 2581 95 2695 96 2461 97 2393 98 2242 99 2107 100 2084 101 2030 102 2017 103 1914 104 1817 105 1780 106 1810 107 1760 108 1646 109 1762 110 1770 111 1704 112 1751 113 1706 114 1585 115 1545 116 1548 117 1548 118 1573 119 1515 120 1476 121 1436 122 1392 123 1419 124 1419 125 1385 126 1339 127 1258 128 1361 129 1343 130 1360 131 1294 132 1299 133 1307 134 1256 135 1241 136 1276 137 1201 138 1170 139 1174 140 1222 141 1234 142 1237 143 1214 144 1181 145 1167 146 1138 147 1203 148 1246 149 1169 150 1179 151 1166 152 1190 153 1213 154 1140 155 1199 156 1201 157 1165 158 1195 159 1197 160 1179 161 1188 162 1211 163 1167 164 1250 165 1162 166 1150 167 1106 168 1161 169 1139 170 1075 171 1148 172 1115 173 1104 174 1122 175 1029 176 1094 177 999 178 1071 179 985 180 957 181 989 182 946 183 906 184 796 185 803 186 848 187 842 188 783 189 774 190 822 191 780 192 739 193 747 194 730 195 679 196 690 197 659 198 672 199 695 200 618 201 674 202 650 203 627 204 624 205 624 206 673 207 684 208 639 209 663 210 733 211 655 212 670 213 665 214 714 215 662 216 642 217 661 218 630 219 599 220 607 221 618 222 554 223 590 224 580 225 604 226 592 227 572 228 585 229 598 230 537 231 609 232 586 233 604 234 579 235 609 236 605 237 572 238 636 239 594 240 579 241 619 242 550 243 568 244 584 245 553 246 573 247 569 248 572 249 550 250 184257