#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005443-DNA_F06.hs38DH/LP6005443-DNA_F06.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005443-DNA_F06.hs38DH/QCmetrics/LP6005443-DNA_F06.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 44.124 13.16 44 6 0 0.022257 0.0020905 0.053411 0.0055785 0.014967 0.098305 0.99872 0.99686 0.99472 0.99192 0.98691 0.97545 0.9437 0.69272 0.24877 0.04038 0.010231 0.0070657 0.0056522 0.0046405 0.99773 26 coverage high_quality_coverage_count 0 3520019 1 1523149 2 1270923 3 1181130 4 1136824 5 1127031 6 1134752 7 1157311 8 1199999 9 1248883 10 1310493 11 1400612 12 1509014 13 1655084 14 1831498 15 2056159 16 2333270 17 2675371 18 3098799 19 3612635 20 4248737 21 5032171 22 6023290 23 7286895 24 8886080 25 10926523 26 13505082 27 16702152 28 20668776 29 25461052 30 31183106 31 37850058 32 45418127 33 53835003 34 62931535 35 72552285 36 82363681 37 92129643 38 101432897 39 109963431 40 117319108 41 123271697 42 127517193 43 129873463 44 130192786 45 128570887 46 125066245 47 119823878 48 113112256 49 105226789 50 96533043 51 87283121 52 77799347 53 68422340 54 59340950 55 50805876 56 42946499 57 35846532 58 29568773 59 24098127 60 19437870 61 15510523 62 12259386 63 9601767 64 7479989 65 5797277 66 4485135 67 3469032 68 2698195 69 2109440 70 1667530 71 1341800 72 1098313 73 919936 74 789139 75 691400 76 616776 77 561879 78 522840 79 488495 80 462673 81 439846 82 422936 83 406013 84 390254 85 376033 86 364533 87 352686 88 340503 89 328750 90 318712 91 308247 92 300284 93 290385 94 281876 95 272014 96 263971 97 256579 98 248119 99 239893 100 232193 101 225850 102 217622 103 212136 104 205328 105 200194 106 194988 107 188392 108 184261 109 179939 110 175050 111 171222 112 166741 113 162677 114 159085 115 154952 116 152069 117 148255 118 144063 119 140744 120 137357 121 134403 122 131861 123 128483 124 125119 125 122657 126 119131 127 116439 128 113386 129 110726 130 108095 131 106096 132 103251 133 101028 134 99081 135 96441 136 93903 137 92180 138 89847 139 87683 140 85771 141 83663 142 82015 143 80062 144 77885 145 76012 146 74324 147 72344 148 71873 149 70286 150 68907 151 67181 152 65444 153 64736 154 63022 155 62326 156 61539 157 59830 158 58981 159 57788 160 57055 161 55838 162 54855 163 54026 164 52793 165 52151 166 50763 167 50214 168 48578 169 47949 170 46774 171 46200 172 45464 173 44634 174 44242 175 43167 176 42827 177 42501 178 41765 179 41252 180 40925 181 40578 182 39309 183 38636 184 38341 185 37399 186 37320 187 36420 188 36075 189 35273 190 34709 191 34396 192 33741 193 33208 194 33005 195 32541 196 31826 197 31462 198 31177 199 30916 200 30293 201 29634 202 29437 203 29289 204 28971 205 28556 206 28354 207 27994 208 27598 209 27013 210 26530 211 26592 212 26046 213 25916 214 25497 215 25235 216 24885 217 24454 218 24039 219 24110 220 23646 221 23299 222 23106 223 22439 224 22601 225 21944 226 21735 227 21378 228 21347 229 20416 230 20848 231 20128 232 19916 233 19682 234 19567 235 19241 236 19022 237 18547 238 18429 239 17996 240 17670 241 17274 242 17318 243 17022 244 17132 245 16816 246 16458 247 15974 248 16155 249 15865 250 2721329