#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005443-DNA_F07.hs38DH/LP6005443-DNA_F07.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005443-DNA_F07.hs38DH/QCmetrics/LP6005443-DNA_F07.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 26.159 29.344 22 5 0 0.064197 0.0010991 0.035927 0.0078134 0.33246 0.4415 0.99899 0.99297 0.95012 0.83804 0.61907 0.32932 0.13614 0.049946 0.041025 0.036607 0.033412 0.030738 0.02835 0.026159 0.99339 22 coverage high_quality_coverage_count 0 23955 1 21361 2 25271 3 37411 4 58282 5 92800 6 138754 7 194972 8 260196 9 325921 10 391212 11 456032 12 521256 13 594589 14 686091 15 790260 16 909798 17 1037886 18 1164200 19 1273455 20 1359281 21 1404071 22 1411299 23 1373728 24 1300260 25 1191015 26 1056976 27 915310 28 771248 29 631636 30 508791 31 400507 32 309767 33 235916 34 175735 35 132232 36 98448 37 74255 38 56930 39 44715 40 36067 41 30128 42 25849 43 22332 44 19785 45 17755 46 16183 47 14903 48 14190 49 13664 50 12501 51 12028 52 11368 53 11107 54 10660 55 10233 56 9962 57 9281 58 8685 59 8588 60 8362 61 8278 62 7997 63 7841 64 7681 65 7263 66 7160 67 6997 68 6995 69 6958 70 6787 71 6830 72 6543 73 6393 74 6409 75 6306 76 6114 77 6039 78 5876 79 5904 80 5919 81 5830 82 5743 83 5780 84 5576 85 5589 86 5680 87 5458 88 5454 89 5418 90 5317 91 5505 92 5313 93 5314 94 5138 95 5086 96 5167 97 5069 98 5022 99 4850 100 4686 101 4619 102 4439 103 4417 104 4350 105 4290 106 4108 107 4046 108 3907 109 4002 110 3934 111 4076 112 3870 113 3700 114 3883 115 3832 116 3736 117 3694 118 3711 119 3781 120 3738 121 3771 122 3793 123 3620 124 3764 125 3712 126 3570 127 3617 128 3679 129 3807 130 3788 131 3927 132 3714 133 3906 134 3849 135 3896 136 3895 137 3941 138 3991 139 4019 140 4070 141 4120 142 4224 143 4239 144 4279 145 4358 146 4489 147 4424 148 4396 149 4411 150 4356 151 4379 152 4485 153 4531 154 4396 155 4497 156 4417 157 4323 158 4501 159 4326 160 4201 161 4240 162 4066 163 4071 164 4010 165 3721 166 3774 167 3684 168 3629 169 3462 170 3328 171 3271 172 3174 173 3023 174 3079 175 2851 176 2777 177 2601 178 2689 179 2569 180 2597 181 2487 182 2441 183 2355 184 2319 185 2241 186 2062 187 2020 188 1927 189 1909 190 1870 191 1793 192 1687 193 1767 194 1704 195 1691 196 1630 197 1585 198 1508 199 1496 200 1470 201 1476 202 1477 203 1314 204 1281 205 1328 206 1302 207 1372 208 1220 209 1293 210 1211 211 1268 212 1181 213 1153 214 1172 215 1134 216 1122 217 1053 218 1147 219 1093 220 1072 221 1043 222 1055 223 988 224 991 225 1032 226 961 227 966 228 919 229 890 230 891 231 861 232 848 233 844 234 816 235 814 236 769 237 779 238 734 239 745 240 744 241 747 242 720 243 679 244 651 245 651 246 644 247 609 248 648 249 630 250 216887