#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005519-DNA_D01.hs38DH/LP6005519-DNA_D01.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005519-DNA_D01.hs38DH/QCmetrics/LP6005519-DNA_D01.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 52.489 15.4 52 8 0 0.027144 0.0012372 0.080226 0.0032934 0.016874 0.12878 0.99884 0.99741 0.99568 0.99352 0.99001 0.98304 0.9675 0.86388 0.59387 0.25732 0.064439 0.015354 0.0083845 0.0065604 0.99806 27 coverage high_quality_coverage_count 0 3191357 1 1146268 2 970264 3 917173 4 905169 5 909217 6 919843 7 938074 8 963851 9 1002461 10 1043743 11 1099889 12 1174273 13 1262072 14 1375756 15 1512735 16 1683373 17 1885028 18 2129648 19 2423498 20 2775186 21 3208226 22 3729378 23 4349886 24 5094507 25 5982375 26 7039186 27 8307792 28 9799615 29 11555813 30 13600498 31 15982779 32 18683889 33 21769478 34 25218838 35 29014510 36 33162744 37 37629820 38 42365793 39 47332526 40 52437543 41 57636168 42 62879860 43 67997822 44 72993137 45 77753557 46 82127004 47 86109081 48 89571223 49 92465893 50 94690447 51 96203035 52 97010695 53 97030991 54 96249753 55 94701695 56 92372770 57 89349769 58 85718035 59 81491698 60 76780596 61 71720690 62 66383871 63 60904904 64 55398690 65 49942781 66 44609474 67 39493910 68 34655941 69 30150497 70 26006492 71 22252047 72 18877046 73 15895532 74 13278236 75 11020966 76 9086084 77 7447172 78 6075000 79 4945495 80 4004857 81 3243694 82 2633839 83 2147819 84 1757501 85 1453666 86 1215702 87 1031940 88 888866 89 774927 90 689708 91 624938 92 568312 93 525983 94 491383 95 464255 96 439387 97 420276 98 402793 99 385546 100 374514 101 360390 102 349292 103 339010 104 326646 105 316976 106 307496 107 298516 108 289386 109 281607 110 273952 111 265775 112 259483 113 252145 114 245307 115 238260 116 232710 117 227233 118 219824 119 214281 120 207258 121 202446 122 197259 123 191436 124 186485 125 181399 126 176543 127 171255 128 167130 129 162252 130 157690 131 153939 132 150420 133 146931 134 143311 135 139858 136 136838 137 133278 138 130368 139 126209 140 123720 141 121274 142 118360 143 116062 144 113895 145 111227 146 108959 147 106437 148 103926 149 102759 150 101220 151 99235 152 97363 153 94950 154 93627 155 92157 156 90086 157 88428 158 86888 159 85291 160 83724 161 82730 162 80446 163 79019 164 78121 165 76817 166 75591 167 74723 168 73323 169 72053 170 70838 171 69731 172 68814 173 67559 174 66102 175 64721 176 64089 177 62649 178 61363 179 60511 180 59193 181 58343 182 56870 183 55537 184 54277 185 53437 186 52338 187 51145 188 49751 189 48717 190 48382 191 46551 192 45954 193 45219 194 44039 195 43438 196 42315 197 42003 198 40881 199 40354 200 39826 201 38893 202 37928 203 37551 204 36351 205 35596 206 35289 207 34708 208 33977 209 33354 210 32985 211 32395 212 32283 213 31556 214 31508 215 30781 216 30204 217 29801 218 29494 219 29117 220 28424 221 27931 222 27885 223 27570 224 26838 225 26440 226 26414 227 25874 228 25755 229 25110 230 24984 231 24482 232 24088 233 23975 234 23806 235 23526 236 23167 237 22744 238 22546 239 22536 240 22299 241 21776 242 21701 243 21644 244 21391 245 21088 246 20774 247 20598 248 20203 249 20029 250 3236026