#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005519-DNA_F03.hs38DH/LP6005519-DNA_F03.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005519-DNA_F03.hs38DH/QCmetrics/LP6005519-DNA_F03.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 42.723 12.916 42 6 0 0.018622 0.0012408 0.049541 0.002866 0.012383 0.084653 0.99888 0.99717 0.99507 0.99206 0.98585 0.96948 0.92354 0.62844 0.20545 0.032946 0.0098892 0.0069348 0.0054459 0.0043972 0.99797 27 coverage high_quality_coverage_count 0 3087034 1 1314402 2 1157246 3 1115076 4 1097383 5 1098951 6 1114776 7 1142297 8 1185339 9 1243983 10 1332470 11 1453425 12 1604725 13 1801658 14 2056368 15 2373873 16 2774307 17 3281253 18 3922972 19 4715622 20 5723492 21 6994398 22 8587275 23 10593952 24 13088739 25 16172134 26 19930288 27 24435585 28 29779990 29 35936031 30 42931338 31 50673546 32 59076979 33 67962123 34 77099732 35 86271078 36 95171913 37 103485111 38 110975928 39 117284949 40 122168161 41 125380721 42 126817833 43 126497931 44 124327669 45 120500065 46 115122932 47 108445583 48 100766310 49 92317506 50 83417184 51 74349136 52 65391682 53 56747750 54 48597061 55 41083313 56 34327717 57 28334248 58 23124794 59 18666258 60 14924990 61 11830887 62 9300517 63 7270771 64 5657622 65 4404704 66 3433078 67 2694637 68 2132299 69 1709014 70 1393989 71 1160091 72 987511 73 858349 74 759199 75 685052 76 628155 77 584130 78 545538 79 516780 80 491752 81 467070 82 447027 83 429373 84 411588 85 396851 86 380535 87 368419 88 355695 89 342944 90 332431 91 321090 92 310907 93 301042 94 291828 95 281064 96 272366 97 265493 98 256590 99 248963 100 241053 101 233807 102 225391 103 218452 104 211657 105 205099 106 199592 107 193568 108 187492 109 182057 110 178362 111 173955 112 168327 113 164146 114 160022 115 155326 116 151132 117 147326 118 143434 119 139714 120 136189 121 132841 122 129535 123 126968 124 124293 125 120352 126 117252 127 114047 128 112737 129 109442 130 106797 131 103701 132 101540 133 98023 134 96424 135 94257 136 91927 137 89330 138 87798 139 85823 140 84085 141 81119 142 79851 143 78306 144 76644 145 74861 146 73155 147 72729 148 71294 149 69787 150 68102 151 67445 152 65394 153 64843 154 63405 155 62066 156 61208 157 59161 158 58637 159 57448 160 56142 161 54790 162 53772 163 52950 164 52077 165 50580 166 49982 167 48878 168 48222 169 46947 170 46347 171 45476 172 44422 173 44255 174 42772 175 42268 176 41763 177 41316 178 40359 179 39607 180 38990 181 38566 182 37312 183 36985 184 36711 185 35641 186 35334 187 34647 188 33921 189 33515 190 33171 191 32429 192 32207 193 31470 194 30506 195 30500 196 29902 197 29571 198 29267 199 28830 200 28578 201 27840 202 27289 203 26967 204 26730 205 26201 206 25753 207 25235 208 24859 209 24756 210 24173 211 24167 212 23617 213 23336 214 23185 215 22424 216 22134 217 21716 218 21310 219 20897 220 20653 221 20085 222 20046 223 19454 224 19461 225 19248 226 18947 227 18854 228 18440 229 18407 230 17940 231 17888 232 17452 233 17485 234 17231 235 16958 236 16543 237 16278 238 16089 239 15708 240 15925 241 15434 242 15265 243 15096 244 14780 245 14500 246 14539 247 14297 248 13989 249 13864 250 2220297