#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i SGDP/LP6005519-DNA_F03.hs38DH/LP6005519-DNA_F03.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005519-DNA_F03.hs38DH/QCmetrics/LP6005519-DNA_F03.hs38DH.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 21.651 6.4441 21 4 0 0.012997 0.0013908 0.045995 0.002745 0.00023011 0.063358 0.99871 0.99566 0.98357 0.90484 0.64037 0.28654 0.079241 0.006582 0.0024346 0.0012137 0.00070554 0.00046631 0.00033592 0.00025783 0.99618 24 coverage high_quality_coverage_count 0 195481 1 100326 2 108347 3 117587 4 138432 5 172170 6 223897 7 310954 8 453505 9 677837 10 1014640 11 1506539 12 2190743 13 3086934 14 4178196 15 5444482 16 6815599 17 8174280 18 9402767 19 10391584 20 11043215 21 11293201 22 11141237 23 10603308 24 9742739 25 8670156 26 7484813 27 6260421 28 5092983 29 4024314 30 3102784 31 2330103 32 1715558 33 1239636 34 885921 35 628197 36 442250 37 313487 38 227610 39 166889 40 126869 41 100095 42 80540 43 67253 44 57899 45 49812 46 43787 47 38965 48 34515 49 31141 50 27779 51 24986 52 22998 53 20614 54 18690 55 16972 56 15393 57 13972 58 12808 59 11517 60 10754 61 9999 62 9198 63 8349 64 7800 65 7085 66 6777 67 6168 68 5887 69 5274 70 4925 71 4510 72 4111 73 3997 74 3712 75 3575 76 3175 77 2933 78 2816 79 2636 80 2463 81 2361 82 2308 83 2123 84 2010 85 1955 86 1735 87 1706 88 1581 89 1593 90 1499 91 1482 92 1352 93 1277 94 1171 95 1110 96 1049 97 1010 98 952 99 976 100 975 101 956 102 914 103 861 104 729 105 798 106 778 107 762 108 783 109 701 110 640 111 616 112 588 113 570 114 587 115 588 116 568 117 492 118 535 119 473 120 499 121 477 122 495 123 428 124 465 125 444 126 419 127 381 128 381 129 384 130 381 131 373 132 365 133 375 134 328 135 337 136 337 137 334 138 302 139 277 140 246 141 274 142 249 143 293 144 254 145 261 146 252 147 265 148 199 149 203 150 207 151 207 152 220 153 188 154 191 155 190 156 165 157 173 158 161 159 173 160 164 161 179 162 186 163 172 164 174 165 142 166 172 167 164 168 162 169 135 170 149 171 143 172 143 173 119 174 165 175 166 176 130 177 153 178 144 179 144 180 144 181 123 182 118 183 133 184 115 185 105 186 105 187 98 188 91 189 91 190 109 191 75 192 103 193 93 194 70 195 104 196 97 197 74 198 99 199 80 200 100 201 102 202 92 203 84 204 83 205 96 206 90 207 92 208 67 209 81 210 79 211 105 212 79 213 97 214 102 215 85 216 71 217 60 218 75 219 64 220 73 221 46 222 58 223 62 224 55 225 67 226 59 227 65 228 60 229 72 230 52 231 53 232 40 233 51 234 39 235 42 236 45 237 51 238 52 239 44 240 42 241 35 242 36 243 48 244 47 245 53 246 50 247 54 248 44 249 40 250 4781