#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005519-DNA_F03.hs38DH/LP6005519-DNA_F03.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005519-DNA_F03.hs38DH/QCmetrics/LP6005519-DNA_F03.hs38DH.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	25.52	25.988	22	4	0	0.045586	0.0012221	0.040247	0.0054371	0.29705	0.38955	0.99954	0.99845	0.98973	0.91367	0.6497	0.30762	0.11577	0.043004	0.032033	0.026461	0.022596	0.019649	0.017517	0.016018	0.99806	27	

coverage	high_quality_coverage_count	
0	10768
1	4887
2	5403
3	6608
4	9084
5	13333
6	20261
7	33961
8	52244
9	86171
10	139854
11	216339
12	325831
13	468622
14	647220
15	846751
16	1057338
17	1270816
18	1458923
19	1605402
20	1691334
21	1710930
22	1674000
23	1575314
24	1433974
25	1263472
26	1076142
27	896141
28	723902
29	574973
30	446520
31	339650
32	254796
33	190015
34	142054
35	106528
36	81846
37	63827
38	51759
39	42894
40	37899
41	33504
42	30013
43	27460
44	25284
45	24023
46	22182
47	20735
48	19765
49	18466
50	17028
51	15864
52	14608
53	13722
54	13167
55	12390
56	11784
57	11488
58	11047
59	10587
60	10561
61	9979
62	9819
63	9459
64	9149
65	8959
66	8709
67	8515
68	8280
69	7931
70	7772
71	7549
72	7696
73	7278
74	7103
75	6958
76	6692
77	6514
78	6119
79	5975
80	5792
81	5795
82	5550
83	5526
84	5005
85	4899
86	4666
87	4518
88	4336
89	4305
90	4025
91	3848
92	3772
93	3721
94	3662
95	3486
96	3433
97	3382
98	3129
99	2982
100	2905
101	2787
102	2748
103	2603
104	2460
105	2419
106	2214
107	2147
108	2038
109	1935
110	1991
111	1912
112	1864
113	1818
114	1805
115	1708
116	1722
117	1805
118	1620
119	1646
120	1564
121	1563
122	1528
123	1549
124	1545
125	1494
126	1491
127	1439
128	1480
129	1436
130	1386
131	1422
132	1379
133	1239
134	1281
135	1311
136	1204
137	1194
138	1239
139	1109
140	1146
141	1203
142	1139
143	1088
144	1051
145	1108
146	1080
147	1066
148	1131
149	1059
150	1060
151	996
152	1007
153	1022
154	999
155	1019
156	1026
157	978
158	1030
159	1004
160	941
161	906
162	956
163	945
164	936
165	965
166	910
167	894
168	895
169	942
170	899
171	871
172	879
173	866
174	837
175	816
176	800
177	813
178	785
179	811
180	860
181	848
182	824
183	840
184	856
185	760
186	771
187	809
188	753
189	741
190	737
191	799
192	810
193	770
194	843
195	888
196	823
197	825
198	845
199	847
200	849
201	847
202	846
203	848
204	847
205	808
206	834
207	798
208	851
209	829
210	859
211	778
212	815
213	792
214	833
215	805
216	781
217	787
218	796
219	772
220	829
221	803
222	779
223	793
224	773
225	754
226	719
227	749
228	719
229	707
230	741
231	726
232	652
233	650
234	706
235	652
236	702
237	655
238	668
239	608
240	624
241	610
242	637
243	630
244	577
245	601
246	602
247	618
248	552
249	549
250	216715