#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005519-DNA_F04.hs38DH/LP6005519-DNA_F04.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005519-DNA_F04.hs38DH/QCmetrics/LP6005519-DNA_F04.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 44.181 13.701 44 6 0 0.021478 0.0010729 0.057969 0.0030585 0.014446 0.098024 0.99879 0.9971 0.99508 0.99213 0.98606 0.97092 0.93141 0.68097 0.26551 0.048811 0.011871 0.0078807 0.0062564 0.0050751 0.99788 27 coverage high_quality_coverage_count 0 3316336 1 1388805 2 1147520 3 1071553 4 1053539 5 1043832 6 1064620 7 1095442 8 1142499 9 1208071 10 1300711 11 1418506 12 1571687 13 1766894 14 2024009 15 2337329 16 2735423 17 3222192 18 3821739 19 4565257 20 5477701 21 6611541 22 8001486 23 9711494 24 11809656 25 14376556 26 17438549 27 21085023 28 25371196 29 30305015 30 35903701 31 42185219 32 49062154 33 56469313 34 64289224 35 72359915 36 80478868 37 88467510 38 96028638 39 102945249 40 108994718 41 113921338 42 117592019 43 119834329 44 120565293 45 119690152 46 117287165 47 113465451 48 108302598 49 102033862 50 94891679 51 87073139 52 78851256 53 70524774 54 62227417 55 54276141 56 46712812 57 39750120 58 33407616 59 27758068 60 22807530 61 18528932 62 14912097 63 11892606 64 9409444 65 7385853 66 5776984 67 4508568 68 3523707 69 2764248 70 2186661 71 1745033 72 1416842 73 1169966 74 986596 75 851891 76 747989 77 673128 78 616079 79 571367 80 537828 81 507078 82 486360 83 465127 84 447200 85 431100 86 416887 87 403411 88 390900 89 377618 90 367082 91 356385 92 347212 93 337888 94 328538 95 318596 96 310471 97 302266 98 293270 99 284617 100 276353 101 268432 102 261006 103 252745 104 246006 105 238040 106 229517 107 223550 108 216401 109 210191 110 202219 111 196957 112 191256 113 185718 114 180050 115 174842 116 170908 117 165539 118 160772 119 155941 120 152750 121 148572 122 144347 123 140556 124 137409 125 134575 126 130517 127 127687 128 125458 129 121999 130 118884 131 116097 132 113692 133 111010 134 107493 135 105345 136 102737 137 100106 138 98226 139 95782 140 94153 141 92656 142 90025 143 88396 144 86278 145 84363 146 82451 147 80662 148 79181 149 77394 150 75863 151 73938 152 72802 153 71423 154 70251 155 68597 156 66841 157 65820 158 64391 159 62822 160 61915 161 60679 162 59748 163 58667 164 57347 165 56180 166 55393 167 53944 168 53283 169 51590 170 50946 171 50235 172 49480 173 47915 174 47728 175 46763 176 45922 177 45246 178 44550 179 43694 180 43020 181 42760 182 41908 183 41009 184 40084 185 39911 186 38925 187 38329 188 37781 189 37309 190 36972 191 36063 192 35236 193 35237 194 34633 195 34017 196 33756 197 33559 198 32810 199 32499 200 31956 201 31254 202 30822 203 30291 204 30227 205 29626 206 29246 207 28840 208 28430 209 28121 210 27873 211 27505 212 26915 213 26721 214 26230 215 26424 216 25914 217 25366 218 25016 219 24839 220 24541 221 24513 222 24076 223 23551 224 23085 225 23369 226 22967 227 22779 228 22604 229 22460 230 22003 231 21660 232 21048 233 21389 234 20979 235 20782 236 20359 237 19925 238 20005 239 19456 240 19494 241 19282 242 18825 243 18947 244 18700 245 18338 246 18626 247 18036 248 17843 249 17503 250 2782314