#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005519-DNA_F04.hs38DH/LP6005519-DNA_F04.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005519-DNA_F04.hs38DH/QCmetrics/LP6005519-DNA_F04.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 27.057 26.505 23 4 0 0.080805 0.00095069 0.044836 0.005233 0.36203 0.49385 0.99925 0.99733 0.98867 0.93223 0.72465 0.39734 0.16292 0.051451 0.037741 0.030047 0.025409 0.022285 0.019908 0.017954 0.9975 26 coverage high_quality_coverage_count 0 17642 1 9070 2 10614 3 11534 4 14252 5 18101 6 24173 7 35069 8 51574 9 75727 10 112503 11 165868 12 242419 13 343271 14 469916 15 625534 16 798577 17 982450 18 1167130 19 1332869 20 1471082 21 1560537 22 1597932 23 1586847 24 1520009 25 1411577 26 1272575 27 1114962 28 950646 29 791099 30 641514 31 511103 32 397221 33 305006 34 231206 35 173584 36 132010 37 100966 38 79001 39 63065 40 51314 41 43275 42 37712 43 33175 44 30366 45 28355 46 26664 47 25415 48 24584 49 23190 50 21942 51 20893 52 20131 53 19513 54 18520 55 18069 56 16928 57 15937 58 15297 59 14627 60 13836 61 13112 62 12205 63 11801 64 11015 65 10420 66 9940 67 9513 68 9038 69 8767 70 8457 71 8152 72 7912 73 7646 74 7634 75 7387 76 7053 77 6753 78 6385 79 6442 80 6293 81 5926 82 5940 83 5850 84 5708 85 5539 86 5409 87 5228 88 5185 89 5107 90 5092 91 4896 92 4823 93 4862 94 4741 95 4613 96 4512 97 4308 98 4274 99 4071 100 3914 101 3755 102 3793 103 3728 104 3583 105 3497 106 3439 107 3424 108 3463 109 3360 110 3329 111 3183 112 2995 113 3016 114 2842 115 2806 116 2743 117 2708 118 2672 119 2509 120 2477 121 2431 122 2373 123 2367 124 2257 125 2213 126 2049 127 1984 128 1956 129 1855 130 1851 131 1814 132 1735 133 1674 134 1633 135 1524 136 1566 137 1463 138 1463 139 1490 140 1428 141 1413 142 1440 143 1386 144 1436 145 1308 146 1246 147 1279 148 1246 149 1235 150 1132 151 1224 152 1223 153 1192 154 1165 155 1145 156 1108 157 1126 158 1156 159 1120 160 1075 161 1160 162 1099 163 1113 164 1057 165 1060 166 1073 167 1110 168 1054 169 1020 170 1003 171 1077 172 1010 173 1054 174 1003 175 979 176 1026 177 993 178 1014 179 1026 180 998 181 1017 182 962 183 976 184 975 185 1008 186 947 187 945 188 895 189 932 190 882 191 910 192 913 193 883 194 844 195 882 196 854 197 854 198 823 199 867 200 874 201 846 202 890 203 829 204 861 205 921 206 836 207 813 208 829 209 877 210 854 211 811 212 805 213 838 214 806 215 756 216 771 217 781 218 815 219 770 220 711 221 686 222 712 223 710 224 670 225 647 226 682 227 691 228 641 229 651 230 664 231 664 232 654 233 679 234 622 235 634 236 627 237 647 238 639 239 617 240 601 241 565 242 614 243 634 244 555 245 625 246 562 247 508 248 558 249 594 250 221406