#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005519-DNA_F06.hs38DH/LP6005519-DNA_F06.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005519-DNA_F06.hs38DH/QCmetrics/LP6005519-DNA_F06.hs38DH.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	2.7257	18.277	0	0	0	0.060096	0.0039611	0.053608	0.023835	0.40505	0.54655	0.15068	0.07706	0.045024	0.030123	0.022711	0.018783	0.016362	0.013306	0.01148	0.010152	0.0092642	0.0085558	0.007909	0.0073532	0.11227	1	

coverage	high_quality_coverage_count	
0	20074734
1	728985
2	437442
3	320200
4	253585
5	208973
6	173498
7	145097
8	123614
9	106033
10	92280
11	80345
12	69073
13	59169
14	51336
15	44388
16	39100
17	34839
18	30225
19	26631
20	23446
21	20655
22	18158
23	16169
24	14425
25	13161
26	12163
27	11314
28	10586
29	9992
30	9244
31	8695
32	8363
33	7765
34	7434
35	6863
36	6564
37	6135
38	5773
39	5397
40	4967
41	4824
42	4522
43	4427
44	4393
45	4160
46	4120
47	3989
48	3940
49	3829
50	3652
51	3668
52	3520
53	3357
54	3205
55	2952
56	2888
57	2804
58	2675
59	2668
60	2497
61	2392
62	2182
63	2210
64	2132
65	1979
66	2024
67	1855
68	1800
69	1903
70	1859
71	1749
72	1734
73	1702
74	1613
75	1679
76	1604
77	1616
78	1639
79	1549
80	1563
81	1619
82	1651
83	1597
84	1598
85	1509
86	1490
87	1493
88	1396
89	1372
90	1369
91	1320
92	1297
93	1393
94	1388
95	1325
96	1324
97	1281
98	1250
99	1189
100	1221
101	1188
102	1177
103	1126
104	1077
105	1075
106	1131
107	1109
108	1035
109	984
110	982
111	978
112	992
113	1047
114	981
115	1035
116	989
117	1045
118	984
119	1044
120	954
121	949
122	976
123	970
124	1008
125	1058
126	1003
127	1031
128	1014
129	954
130	999
131	1024
132	953
133	1005
134	986
135	1032
136	1022
137	928
138	953
139	975
140	1010
141	910
142	1027
143	937
144	953
145	968
146	905
147	889
148	934
149	894
150	861
151	855
152	881
153	858
154	873
155	923
156	795
157	787
158	766
159	762
160	742
161	717
162	717
163	684
164	708
165	705
166	739
167	709
168	672
169	710
170	674
171	649
172	631
173	595
174	674
175	627
176	632
177	602
178	592
179	655
180	603
181	595
182	629
183	627
184	622
185	589
186	633
187	586
188	565
189	574
190	594
191	550
192	553
193	551
194	543
195	521
196	499
197	513
198	506
199	538
200	506
201	500
202	455
203	461
204	500
205	465
206	454
207	417
208	463
209	455
210	419
211	448
212	439
213	383
214	393
215	421
216	424
217	389
218	377
219	375
220	370
221	368
222	362
223	377
224	353
225	372
226	373
227	329
228	344
229	316
230	316
231	307
232	309
233	292
234	290
235	283
236	289
237	283
238	284
239	277
240	279
241	262
242	245
243	258
244	255
245	262
246	244
247	232
248	258
249	232
250	72432