#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005592-DNA_B02.hs38DH/LP6005592-DNA_B02.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005592-DNA_B02.hs38DH/QCmetrics/LP6005592-DNA_B02.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 21.426 25.062 17 3 0 0.051323 0.0024305 0.059999 0.0073292 0.30593 0.42701 0.99908 0.99511 0.9538 0.72947 0.35149 0.12297 0.058853 0.039986 0.033638 0.02888 0.024595 0.02052 0.017051 0.014789 0.99382 22 coverage high_quality_coverage_count 0 21670 1 16394 2 17604 3 24187 4 35646 5 59076 6 98056 7 161760 8 259781 9 397939 10 581709 11 805099 12 1057460 13 1315303 14 1542669 15 1727596 16 1839178 17 1868843 18 1812305 19 1686118 20 1504500 21 1290326 22 1071978 23 860702 24 673885 25 510856 26 380124 27 278164 28 201778 29 144574 30 104366 31 77932 32 59238 33 45743 34 36826 35 31053 36 26524 37 23599 38 20939 39 19742 40 18338 41 17227 42 16232 43 15596 44 14993 45 14306 46 14046 47 13519 48 12937 49 12841 50 12246 51 12226 52 11868 53 11546 54 11329 55 11147 56 10935 57 10443 58 10330 59 10384 60 10260 61 10161 62 9990 63 10350 64 10358 65 10156 66 10048 67 10207 68 9867 69 9887 70 9706 71 9903 72 9717 73 9726 74 9671 75 9747 76 9589 77 9633 78 9415 79 9208 80 9058 81 8955 82 8921 83 8594 84 8328 85 8371 86 8052 87 7519 88 7239 89 6961 90 6570 91 6419 92 6175 93 5714 94 5404 95 5132 96 4837 97 4604 98 4391 99 4222 100 3966 101 3699 102 3589 103 3487 104 3225 105 3190 106 2906 107 2753 108 2538 109 2540 110 2383 111 2197 112 2165 113 2181 114 2078 115 1948 116 1800 117 1735 118 1645 119 1692 120 1634 121 1571 122 1538 123 1501 124 1428 125 1418 126 1456 127 1435 128 1397 129 1395 130 1378 131 1251 132 1281 133 1215 134 1238 135 1237 136 1152 137 1141 138 1184 139 1202 140 1152 141 1185 142 1160 143 1164 144 1137 145 1151 146 1148 147 1151 148 1196 149 1216 150 1180 151 1244 152 1244 153 1196 154 1212 155 1218 156 1189 157 1142 158 1164 159 1063 160 1153 161 1093 162 1146 163 1143 164 1135 165 1136 166 1083 167 1049 168 1036 169 1023 170 1019 171 965 172 966 173 966 174 948 175 950 176 977 177 960 178 939 179 883 180 900 181 845 182 901 183 830 184 918 185 871 186 816 187 918 188 879 189 836 190 867 191 852 192 810 193 859 194 811 195 829 196 774 197 842 198 842 199 831 200 820 201 742 202 763 203 756 204 774 205 769 206 734 207 784 208 719 209 674 210 689 211 733 212 669 213 708 214 641 215 644 216 645 217 586 218 684 219 645 220 657 221 683 222 632 223 607 224 643 225 632 226 628 227 637 228 692 229 592 230 598 231 559 232 601 233 576 234 555 235 496 236 528 237 522 238 528 239 540 240 511 241 494 242 486 243 444 244 434 245 467 246 443 247 448 248 433 249 487 250 178945