#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i SGDP/LP6005592-DNA_C01.hs38DH/LP6005592-DNA_C01.hs38DH.cram --algo AlignmentStat SGDP/LP6005592-DNA_C01.hs38DH/QCmetrics/LP6005592-DNA_C01.hs38DH.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	753628141	753628141	1.000000	0	747785832	0.992248	74222591239	698164153	69465585265	66832250231	0.000000	0.003864	0.003349	0.000201	100.000000	744317477	0.995362	0	0.500137	0.016509	0.000003	
SECOND_OF_PAIR	753628141	753628141	1.000000	0	744507052	0.987897	73642414042	694669388	68913264688	64844570819	0.000000	0.004931	0.004415	0.000199	100.000000	744317477	0.999745	0	0.499930	0.016661	0.000112	
PAIR	1507256282	1507256282	1.000000	0	1492292884	0.990072	147865005281	1392833541	138378849953	131676821050	0.000000	0.004395	0.003880	0.000200	100.000000	1488634954	0.997549	0	0.500034	0.016585	0.000058