#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005592-DNA_C01.hs38DH/LP6005592-DNA_C01.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005592-DNA_C01.hs38DH/QCmetrics/LP6005592-DNA_C01.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 46.061 13.39 46 6 0 0.01439 0.0017328 0.047586 0.0058407 0.015224 0.084773 0.99873 0.99708 0.99513 0.99253 0.98802 0.97843 0.95435 0.75927 0.33326 0.065396 0.013404 0.0080291 0.0062355 0.0050021 0.99786 27 coverage high_quality_coverage_count 0 3484279 1 1360558 2 1113943 3 1045467 4 1018076 5 1013596 6 1034047 7 1058982 8 1103112 9 1152471 10 1214978 11 1294251 12 1401071 13 1532019 14 1688878 15 1886551 16 2124654 17 2416041 18 2770807 19 3198086 20 3710900 21 4339936 22 5091602 23 6022827 24 7195875 25 8641654 26 10446473 27 12692537 28 15485023 29 18895500 30 23003555 31 27884779 32 33574775 33 40068623 34 47343825 35 55318366 36 63836843 37 72716415 38 81735508 39 90608852 40 99039487 41 106709227 42 113331942 43 118686223 44 122524025 45 124684668 46 125104563 47 123735343 48 120715499 49 116112679 50 110154757 51 103078005 52 95129750 53 86602092 54 77801214 55 68951577 56 60342118 57 52115814 58 44461018 59 37452818 60 31189764 61 25681397 62 20914488 63 16871538 64 13465005 65 10665717 66 8385199 67 6568854 68 5125652 69 4004302 70 3136878 71 2470839 72 1972047 73 1593293 74 1312042 75 1100524 76 945149 77 827716 78 740026 79 672603 80 620032 81 580273 82 544184 83 515061 84 491301 85 470879 86 451234 87 434137 88 419585 89 402303 90 389660 91 378181 92 365735 93 354497 94 343694 95 332154 96 321200 97 310885 98 301142 99 291989 100 282146 101 272535 102 263742 103 255395 104 246264 105 238860 106 231092 107 222208 108 214592 109 207394 110 201180 111 195112 112 188889 113 183444 114 177699 115 172790 116 167554 117 162962 118 158590 119 155384 120 151168 121 147169 122 143472 123 139128 124 135335 125 132240 126 128449 127 125031 128 122951 129 120399 130 117977 131 116418 132 113708 133 111847 134 108838 135 107636 136 105360 137 103289 138 101063 139 99691 140 97484 141 95803 142 94279 143 92670 144 90593 145 88197 146 86477 147 84717 148 83355 149 80905 150 79788 151 78047 152 76719 153 74878 154 73512 155 71975 156 70538 157 68905 158 66923 159 65143 160 64136 161 62486 162 60854 163 59294 164 57846 165 56578 166 54937 167 53509 168 52689 169 51868 170 50590 171 49150 172 48532 173 47408 174 46324 175 45832 176 44947 177 43653 178 43589 179 42370 180 42047 181 40896 182 40136 183 39589 184 38527 185 38221 186 37614 187 36993 188 36444 189 35682 190 35387 191 34919 192 34415 193 33907 194 33330 195 32696 196 32499 197 31811 198 31241 199 30835 200 30194 201 29800 202 29419 203 29011 204 28512 205 28181 206 27709 207 27267 208 26607 209 26361 210 25516 211 25006 212 24795 213 24639 214 24200 215 24164 216 23870 217 23567 218 23200 219 22708 220 22338 221 21998 222 21814 223 21533 224 21190 225 21089 226 20936 227 20595 228 20660 229 20128 230 19935 231 19679 232 19325 233 19046 234 18639 235 18967 236 18329 237 18200 238 17886 239 17777 240 17553 241 17188 242 16978 243 16608 244 16460 245 16184 246 16162 247 15994 248 15838 249 15417 250 2652809