#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005592-DNA_C01.hs38DH/LP6005592-DNA_C01.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005592-DNA_C01.hs38DH/QCmetrics/LP6005592-DNA_C01.hs38DH.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	3.0897	20.589	0	0	0	0.067267	0.0039384	0.044509	0.025193	0.44104	0.58194	0.15025	0.077577	0.046599	0.032108	0.02459	0.020544	0.01811	0.015077	0.013049	0.011613	0.01056	0.0097583	0.0091035	0.0085736	0.1134	1	

coverage	high_quality_coverage_count	
0	20084948
1	732339
2	428164
3	312374
4	244904
5	199662
6	167609
7	141934
8	120979
9	102003
10	88577
11	77284
12	67047
13	58662
14	50946
15	45257
16	40733
17	34310
18	30355
19	27059
20	23690
21	21097
22	19083
23	16748
24	15005
25	13748
26	12441
27	11370
28	10544
29	9424
30	8853
31	8254
32	7866
33	7684
34	7056
35	7016
36	6803
37	6327
38	6094
39	5749
40	5398
41	5487
42	5331
43	5182
44	4904
45	4657
46	4405
47	4389
48	4142
49	4025
50	4002
51	3817
52	3738
53	3505
54	3481
55	3187
56	3183
57	3127
58	2994
59	2920
60	2884
61	2757
62	2648
63	2595
64	2613
65	2478
66	2388
67	2220
68	2241
69	2052
70	1934
71	1935
72	2038
73	1977
74	1926
75	1854
76	1801
77	1838
78	1782
79	1871
80	1767
81	1726
82	1611
83	1549
84	1559
85	1425
86	1504
87	1427
88	1437
89	1473
90	1354
91	1377
92	1308
93	1303
94	1288
95	1236
96	1232
97	1205
98	1083
99	1138
100	1070
101	1064
102	1000
103	1075
104	1069
105	1049
106	1042
107	1039
108	1032
109	1035
110	1010
111	1028
112	934
113	911
114	878
115	880
116	826
117	852
118	770
119	844
120	785
121	803
122	756
123	830
124	734
125	799
126	775
127	768
128	774
129	780
130	751
131	768
132	774
133	835
134	810
135	774
136	803
137	769
138	771
139	805
140	763
141	827
142	792
143	734
144	763
145	757
146	721
147	780
148	732
149	696
150	732
151	781
152	747
153	705
154	694
155	707
156	671
157	681
158	666
159	669
160	660
161	641
162	620
163	638
164	683
165	624
166	655
167	686
168	618
169	646
170	615
171	592
172	613
173	625
174	622
175	589
176	572
177	623
178	617
179	587
180	638
181	583
182	573
183	622
184	586
185	553
186	590
187	593
188	589
189	572
190	542
191	547
192	564
193	553
194	525
195	508
196	518
197	537
198	533
199	540
200	554
201	557
202	545
203	559
204	580
205	539
206	559
207	580
208	591
209	586
210	595
211	581
212	563
213	593
214	625
215	597
216	651
217	608
218	631
219	626
220	628
221	604
222	652
223	622
224	607
225	589
226	649
227	605
228	595
229	583
230	609
231	527
232	566
233	564
234	561
235	579
236	547
237	555
238	553
239	590
240	554
241	546
242	535
243	497
244	505
245	522
246	532
247	441
248	450
249	479
250	100601