#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005592-DNA_C02.hs38DH/LP6005592-DNA_C02.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005592-DNA_C02.hs38DH/QCmetrics/LP6005592-DNA_C02.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 45.389 13.143 45 6 0 0.015129 0.0015692 0.047196 0.00693 0.012316 0.08314 0.99866 0.99679 0.99461 0.99176 0.98685 0.9766 0.95122 0.74354 0.30303 0.053157 0.011449 0.0074114 0.0058912 0.0048302 0.99768 26 coverage high_quality_coverage_count 0 3684109 1 1531906 2 1271559 3 1178682 4 1149206 5 1149635 6 1167103 7 1187556 8 1223978 9 1270404 10 1343417 11 1425550 12 1537596 13 1670625 14 1841605 15 2053708 16 2318943 17 2637813 18 3015734 19 3466417 20 4014002 21 4658850 22 5457190 23 6426668 24 7628699 25 9133184 26 11019610 27 13369927 28 16301636 29 19897350 30 24272489 31 29487244 32 35588684 33 42583003 34 50380141 35 58979451 36 68122542 37 77607612 38 87203674 39 96495665 40 105242111 41 113058942 42 119561263 43 124556937 44 127760567 45 129072061 46 128433827 47 125838399 48 121453907 49 115517886 50 108200596 51 99899168 52 90889964 53 81551157 54 72193308 55 62998191 56 54224676 57 46067831 58 38624078 59 31994399 60 26175800 61 21173926 62 16955195 63 13439751 64 10556995 65 8236223 66 6384203 67 4930611 68 3811446 69 2948265 70 2294847 71 1808634 72 1445306 73 1182808 74 984510 75 842837 76 734464 77 655552 78 594754 79 550630 80 512717 81 482215 82 458775 83 436865 84 417101 85 400116 86 388266 87 373435 88 360022 89 348000 90 334863 91 325537 92 313060 93 304120 94 294654 95 284216 96 276474 97 268643 98 260700 99 253166 100 247008 101 238370 102 231738 103 224463 104 218450 105 212072 106 206784 107 199727 108 194844 109 190269 110 183479 111 179036 112 174428 113 170357 114 166176 115 162158 116 158882 117 155004 118 150959 119 148111 120 144986 121 142322 122 139172 123 137289 124 134386 125 132344 126 129651 127 127455 128 125169 129 123439 130 120747 131 118589 132 116521 133 114027 134 111828 135 109673 136 107721 137 106347 138 103939 139 102737 140 100404 141 99172 142 96184 143 94327 144 92788 145 91975 146 89285 147 87348 148 85603 149 84749 150 82143 151 80574 152 79016 153 77870 154 75730 155 74455 156 72976 157 71399 158 69835 159 68166 160 66864 161 65538 162 63978 163 63001 164 61432 165 60683 166 58697 167 57827 168 56106 169 55349 170 53907 171 53291 172 51984 173 50950 174 49796 175 49364 176 47933 177 47115 178 46191 179 45732 180 44552 181 43951 182 43326 183 41886 184 41670 185 40740 186 39894 187 39008 188 38855 189 38032 190 37210 191 36483 192 36221 193 35430 194 34931 195 34004 196 33566 197 32711 198 32218 199 31796 200 31020 201 30444 202 29920 203 29747 204 28916 205 28642 206 28216 207 27818 208 27260 209 27070 210 26540 211 25863 212 25472 213 25462 214 24791 215 24460 216 24117 217 23670 218 23386 219 22726 220 22765 221 22542 222 22173 223 21673 224 21485 225 21104 226 20639 227 20512 228 20019 229 20177 230 19796 231 19329 232 18799 233 18762 234 18484 235 18489 236 18251 237 18103 238 17690 239 17470 240 17081 241 16723 242 16561 243 16518 244 16365 245 16268 246 15842 247 15872 248 15473 249 15476 250 2380388