#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005592-DNA_C02.hs38DH/LP6005592-DNA_C02.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005592-DNA_C02.hs38DH/QCmetrics/LP6005592-DNA_C02.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 25.751 27.219 22 5 0 0.07535 0.0013051 0.038245 0.009228 0.34919 0.47332 0.9987 0.99259 0.95309 0.84718 0.63391 0.33915 0.13792 0.049205 0.040243 0.035511 0.03177 0.028013 0.024004 0.020299 0.99331 22 coverage high_quality_coverage_count 0 30619 1 23553 2 27508 3 37541 4 55918 5 84840 6 127250 7 181230 8 239367 9 301048 10 365249 11 429746 12 494088 13 564257 14 649792 15 751458 16 873764 17 1009332 18 1143820 19 1262710 20 1357154 21 1419342 22 1438522 23 1412708 24 1339189 25 1232299 26 1102059 27 956604 28 805579 29 659899 30 529474 31 415849 32 322412 33 241629 34 180732 35 134546 36 98890 37 74167 38 55758 39 43422 40 35565 41 29161 42 25107 43 22299 44 19907 45 18224 46 16785 47 15856 48 14926 49 14000 50 13498 51 13030 52 12357 53 11789 54 11050 55 10735 56 10111 57 9959 58 9873 59 9451 60 9331 61 9264 62 8878 63 8700 64 8721 65 8635 66 8729 67 8514 68 8786 69 8855 70 8937 71 8857 72 8718 73 8806 74 8682 75 8717 76 8869 77 8868 78 9202 79 9152 80 9333 81 9600 82 9457 83 9626 84 9348 85 9279 86 9547 87 9634 88 9602 89 9337 90 9457 91 9352 92 9224 93 9240 94 8829 95 8880 96 8535 97 8207 98 8120 99 7733 100 7638 101 7462 102 7218 103 6990 104 6560 105 6358 106 6045 107 5709 108 5577 109 5452 110 5248 111 5169 112 4856 113 4641 114 4531 115 4382 116 4111 117 4046 118 4017 119 3744 120 3633 121 3316 122 3313 123 3211 124 3157 125 3076 126 2838 127 2821 128 2729 129 2631 130 2473 131 2435 132 2290 133 2204 134 2136 135 2083 136 1980 137 1924 138 1892 139 1773 140 1663 141 1688 142 1603 143 1550 144 1532 145 1502 146 1498 147 1444 148 1359 149 1417 150 1328 151 1347 152 1318 153 1266 154 1249 155 1274 156 1251 157 1201 158 1252 159 1272 160 1214 161 1171 162 1170 163 1184 164 1078 165 1110 166 1109 167 1055 168 1046 169 1090 170 1099 171 1106 172 1096 173 1048 174 1020 175 1145 176 997 177 1080 178 1056 179 1070 180 1065 181 1053 182 984 183 1025 184 981 185 909 186 918 187 948 188 923 189 910 190 840 191 903 192 892 193 913 194 929 195 865 196 936 197 981 198 872 199 927 200 933 201 941 202 880 203 928 204 895 205 903 206 861 207 911 208 852 209 864 210 828 211 839 212 827 213 795 214 843 215 773 216 783 217 807 218 779 219 769 220 834 221 768 222 780 223 777 224 711 225 754 226 766 227 727 228 761 229 722 230 741 231 702 232 754 233 670 234 620 235 677 236 708 237 696 238 637 239 638 240 598 241 643 242 598 243 585 244 609 245 587 246 572 247 621 248 590 249 618 250 211911