#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005592-DNA_D01.hs38DH/LP6005592-DNA_D01.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005592-DNA_D01.hs38DH/QCmetrics/LP6005592-DNA_D01.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 42.708 13.275 42 6 0 0.013903 0.0015361 0.038268 0.0033948 0.016291 0.073393 0.99854 0.99649 0.99412 0.99085 0.98442 0.96859 0.92475 0.6305 0.20101 0.031113 0.0097871 0.0070992 0.0056684 0.0046476 0.99747 26 coverage high_quality_coverage_count 0 4015755 1 1659747 2 1389180 3 1309027 4 1272299 5 1254911 6 1262569 7 1275062 8 1321527 9 1384701 10 1473221 11 1591469 12 1749495 13 1958427 14 2214178 15 2534765 16 2928786 17 3418699 18 4026207 19 4768684 20 5697636 21 6858965 22 8315782 23 10164507 24 12472864 25 15355861 26 18932249 27 23263611 28 28431866 29 34479120 30 41424737 31 49220246 32 57764327 33 66910618 34 76433319 35 86047851 36 95432513 37 104242937 38 112195156 39 118913749 40 124107091 41 127598790 42 129183964 43 128840245 44 126603682 45 122542313 46 116882475 47 109857220 48 101754648 49 92865983 50 83556625 51 74114101 52 64864936 53 55995380 54 47721007 55 40121060 56 33311695 57 27315759 58 22128740 59 17736608 60 14075611 61 11066892 62 8639196 63 6702887 64 5178390 65 3999938 66 3098038 67 2415432 68 1901341 69 1524196 70 1243903 71 1039184 72 888423 73 775784 74 692292 75 629103 76 579697 77 542548 78 510737 79 484430 80 461878 81 443415 82 427278 83 411549 84 396089 85 382831 86 370000 87 357492 88 345920 89 335294 90 324931 91 313941 92 304032 93 293589 94 284261 95 274777 96 264435 97 255615 98 248398 99 241139 100 233270 101 225691 102 219565 103 212367 104 206044 105 198546 106 192004 107 187603 108 181397 109 175833 110 170810 111 167071 112 162277 113 158854 114 154213 115 150844 116 147411 117 143980 118 140920 119 137332 120 134795 121 132001 122 128579 123 125423 124 122374 125 120228 126 116995 127 114865 128 112148 129 110190 130 107524 131 105270 132 103662 133 102059 134 99616 135 97959 136 95338 137 94018 138 91960 139 90507 140 88557 141 86493 142 84859 143 83206 144 81733 145 79727 146 78209 147 76866 148 74963 149 73109 150 71758 151 70101 152 68470 153 66497 154 65048 155 63904 156 62836 157 61352 158 60093 159 58569 160 57647 161 55923 162 54327 163 54288 164 53048 165 52253 166 51388 167 50426 168 49556 169 48448 170 47878 171 47353 172 46044 173 45127 174 44674 175 44014 176 42987 177 42377 178 41510 179 41375 180 40981 181 40629 182 39619 183 38755 184 38387 185 37856 186 37740 187 36978 188 36400 189 36322 190 35108 191 35071 192 34890 193 34342 194 34209 195 33623 196 33104 197 33009 198 32334 199 31644 200 31645 201 31031 202 31051 203 30419 204 30490 205 29732 206 29663 207 28882 208 28742 209 28348 210 28175 211 27526 212 27261 213 26774 214 26325 215 26065 216 25675 217 25407 218 24621 219 24645 220 24250 221 23928 222 23238 223 23021 224 22774 225 22472 226 21842 227 21665 228 21106 229 20918 230 20773 231 20303 232 20146 233 19512 234 19540 235 19341 236 18691 237 18502 238 18370 239 18006 240 18009 241 17593 242 17593 243 17094 244 16841 245 16650 246 16854 247 16075 248 15889 249 15890 250 2702653