#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005592-DNA_D01.hs38DH/LP6005592-DNA_D01.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005592-DNA_D01.hs38DH/QCmetrics/LP6005592-DNA_D01.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 24.93 27.975 21 5 0 0.081966 0.0011786 0.029319 0.0055847 0.3779 0.49595 0.99804 0.98399 0.92369 0.81418 0.58715 0.29455 0.11809 0.048622 0.038697 0.033304 0.029694 0.027192 0.025294 0.023473 0.98776 19 coverage high_quality_coverage_count 0 46423 1 40487 2 59925 3 94203 4 137371 5 194019 6 246417 7 291627 8 329069 9 364081 10 401209 11 443917 12 496868 13 573156 14 673263 15 792080 16 931902 17 1079840 18 1222865 19 1339451 20 1415684 21 1449089 22 1428950 23 1362135 24 1260256 25 1134107 26 984051 27 830959 28 680255 29 541597 30 422208 31 324605 32 244475 33 182296 34 136150 35 103055 36 78382 37 60570 38 49080 39 41039 40 34845 41 30661 42 27627 43 25090 44 23060 45 21501 46 19778 47 18676 48 17093 49 16252 50 15481 51 14968 52 14100 53 13670 54 12962 55 12254 56 11740 57 11288 58 10692 59 10319 60 9784 61 9429 62 9208 63 8973 64 8712 65 8496 66 8183 67 7802 68 7498 69 7229 70 7001 71 6645 72 6309 73 6186 74 5936 75 5747 76 5566 77 5465 78 5173 79 5109 80 4916 81 4588 82 4618 83 4516 84 4503 85 4395 86 4415 87 4290 88 4321 89 4309 90 4301 91 4177 92 4353 93 4214 94 4397 95 4422 96 4358 97 4302 98 4227 99 4286 100 4423 101 4418 102 4466 103 4437 104 4475 105 4661 106 4612 107 4748 108 4868 109 4912 110 4898 111 4800 112 5024 113 5296 114 5179 115 5340 116 5461 117 5584 118 5577 119 5541 120 5626 121 5601 122 5670 123 5742 124 5725 125 5610 126 5721 127 5468 128 5434 129 5357 130 5252 131 5035 132 5025 133 4796 134 4709 135 4622 136 4331 137 4170 138 4242 139 4020 140 3902 141 3788 142 3648 143 3563 144 3359 145 3292 146 3122 147 3064 148 3092 149 2785 150 2685 151 2507 152 2388 153 2294 154 2255 155 2148 156 1935 157 1947 158 1782 159 1771 160 1717 161 1699 162 1599 163 1703 164 1490 165 1466 166 1456 167 1417 168 1360 169 1348 170 1290 171 1378 172 1387 173 1319 174 1279 175 1282 176 1201 177 1228 178 1289 179 1260 180 1183 181 1203 182 1197 183 1145 184 1142 185 1106 186 1117 187 1122 188 1070 189 973 190 1023 191 1008 192 1003 193 1001 194 968 195 944 196 927 197 908 198 869 199 841 200 871 201 880 202 845 203 884 204 838 205 806 206 803 207 817 208 803 209 741 210 778 211 757 212 769 213 700 214 703 215 708 216 691 217 687 218 697 219 693 220 700 221 649 222 686 223 627 224 610 225 592 226 589 227 626 228 617 229 577 230 591 231 601 232 580 233 595 234 589 235 584 236 616 237 598 238 575 239 527 240 602 241 606 242 545 243 576 244 577 245 578 246 525 247 565 248 596 249 521 250 216411