#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005592-DNA_D04.hs38DH/LP6005592-DNA_D04.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005592-DNA_D04.hs38DH/QCmetrics/LP6005592-DNA_D04.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 39.542 12.144 39 5 0 0.025626 0.0023852 0.030498 0.0072056 0.014042 0.079757 0.9986 0.99672 0.99438 0.99099 0.98388 0.96383 0.89796 0.47903 0.089222 0.01383 0.0079719 0.0061134 0.0048308 0.0039376 0.99762 26 coverage high_quality_coverage_count 0 3838771 1 1476657 2 1273041 3 1212471 4 1203429 5 1216872 6 1226706 7 1265675 8 1324792 9 1397905 10 1497112 11 1632295 12 1812153 13 2046661 14 2340440 15 2716240 16 3178153 17 3753070 18 4481415 19 5402060 20 6605162 21 8197886 22 10327704 23 13143543 24 16813509 25 21531030 26 27498030 27 34794323 28 43533567 29 53656086 30 64991030 31 77302658 32 90151720 33 103020995 34 115340714 35 126429143 36 135736827 37 142732127 38 147041067 39 148469855 40 146936680 41 142560681 42 135682333 43 126679793 44 116111786 45 104510384 46 92384397 47 80248779 48 68508520 49 57548967 50 47554759 51 38698720 52 31052625 53 24558617 54 19199050 55 14819727 56 11326212 57 8592268 58 6484905 59 4887555 60 3690614 61 2809901 62 2164566 63 1700123 64 1369653 65 1132170 66 961129 67 839111 68 748480 69 683444 70 631266 71 592262 72 559949 73 532809 74 509522 75 489647 76 471252 77 455854 78 438777 79 425778 80 411133 81 397241 82 383772 83 370541 84 358006 85 344590 86 332676 87 321367 88 307965 89 297276 90 288424 91 277152 92 265307 93 256587 94 247962 95 238963 96 231359 97 224157 98 215367 99 209129 100 201760 101 195145 102 189542 103 184615 104 178792 105 174182 106 168546 107 164139 108 159909 109 155990 110 151326 111 148360 112 143978 113 139721 114 136306 115 133090 116 129740 117 126724 118 123835 119 120975 120 117643 121 114684 122 111035 123 109528 124 105831 125 102862 126 100825 127 98184 128 96150 129 93305 130 91862 131 89657 132 87948 133 85738 134 83688 135 81785 136 79803 137 77452 138 75924 139 74553 140 72677 141 70740 142 69673 143 67828 144 67010 145 65776 146 64224 147 62625 148 61839 149 60195 150 58528 151 58097 152 56438 153 55660 154 54417 155 53227 156 52384 157 51297 158 50421 159 49166 160 48629 161 48252 162 46902 163 45845 164 45099 165 44432 166 44065 167 42821 168 42299 169 42040 170 41029 171 40185 172 39914 173 39003 174 37738 175 37539 176 37079 177 36464 178 35834 179 35706 180 34732 181 34268 182 33258 183 33045 184 32385 185 31901 186 31763 187 31141 188 30704 189 30051 190 29930 191 29273 192 28866 193 28343 194 28165 195 27412 196 26989 197 26732 198 26473 199 26284 200 25562 201 25198 202 24877 203 24814 204 24088 205 23828 206 23563 207 23026 208 22687 209 22547 210 22070 211 21861 212 21580 213 21269 214 20782 215 20591 216 20283 217 19827 218 19490 219 19373 220 18922 221 18851 222 18488 223 18456 224 18391 225 17801 226 17376 227 17103 228 16977 229 17075 230 16732 231 16472 232 16180 233 15951 234 15799 235 15569 236 15544 237 14924 238 14965 239 14713 240 14580 241 14340 242 14299 243 14020 244 14120 245 13929 246 13497 247 13413 248 13300 249 13289 250 2258115