#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005592-DNA_D04.hs38DH/LP6005592-DNA_D04.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005592-DNA_D04.hs38DH/QCmetrics/LP6005592-DNA_D04.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 23.984 26.068 20 4 0 0.1354 0.0013452 0.02065 0.0090695 0.4246 0.59106 0.99169 0.98874 0.97431 0.86608 0.54575 0.22035 0.083041 0.041894 0.032391 0.026707 0.023203 0.020699 0.018587 0.016803 0.98896 20 coverage high_quality_coverage_count 0 196373 1 20460 2 15550 3 15246 4 18560 5 25039 6 36527 7 56382 8 86437 9 136707 10 212474 11 323083 12 473841 13 664233 14 884522 15 1126787 16 1361846 17 1569834 18 1718912 19 1793957 20 1794430 21 1717784 22 1577869 23 1402138 24 1199137 25 994014 26 797331 27 623982 28 474951 29 355153 30 259702 31 189304 32 137928 33 101487 34 76184 35 58625 36 46815 37 38754 38 33537 39 30240 40 28506 41 26331 42 24894 43 24009 44 22724 45 21436 46 20458 47 19693 48 18670 49 17904 50 16715 51 15924 52 15090 53 14262 54 13824 55 12973 56 12211 57 11754 58 10999 59 10583 60 10042 61 9574 62 9165 63 8723 64 8388 65 8008 66 7637 67 7397 68 7060 69 6835 70 6551 71 6322 72 6164 73 5982 74 5987 75 5760 76 5731 77 5707 78 5563 79 5420 80 5225 81 5310 82 5321 83 5243 84 4926 85 4891 86 4931 87 4828 88 4558 89 4690 90 4625 91 4475 92 4324 93 4325 94 4167 95 4124 96 4052 97 4086 98 4054 99 3917 100 3829 101 3651 102 3520 103 3408 104 3348 105 3216 106 3201 107 3079 108 2885 109 2761 110 2706 111 2644 112 2602 113 2440 114 2336 115 2267 116 2280 117 2237 118 2176 119 2151 120 2067 121 1936 122 1962 123 1878 124 1815 125 1901 126 1798 127 1739 128 1724 129 1699 130 1609 131 1678 132 1638 133 1506 134 1592 135 1505 136 1449 137 1487 138 1479 139 1401 140 1432 141 1416 142 1327 143 1364 144 1357 145 1348 146 1421 147 1386 148 1453 149 1389 150 1413 151 1375 152 1317 153 1358 154 1294 155 1335 156 1231 157 1269 158 1222 159 1269 160 1214 161 1181 162 1203 163 1127 164 1122 165 1132 166 1111 167 1139 168 1150 169 1002 170 1108 171 1061 172 1034 173 1101 174 1083 175 1027 176 1023 177 993 178 975 179 915 180 932 181 882 182 882 183 852 184 909 185 874 186 898 187 890 188 868 189 866 190 809 191 827 192 819 193 727 194 814 195 756 196 728 197 792 198 746 199 754 200 717 201 740 202 704 203 745 204 739 205 732 206 733 207 716 208 763 209 698 210 710 211 681 212 681 213 654 214 618 215 665 216 613 217 585 218 661 219 569 220 657 221 624 222 622 223 625 224 616 225 575 226 641 227 658 228 615 229 658 230 628 231 651 232 651 233 605 234 623 235 574 236 613 237 605 238 620 239 594 240 572 241 603 242 590 243 565 244 577 245 505 246 514 247 523 248 562 249 519 250 209561