#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005592-DNA_E02.hs38DH/LP6005592-DNA_E02.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005592-DNA_E02.hs38DH/QCmetrics/LP6005592-DNA_E02.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 43.607 13.193 43 6 0 0.026512 0.0017396 0.069423 0.0062954 0.014463 0.11843 0.99875 0.9969 0.99469 0.99144 0.98473 0.96789 0.9244 0.6615 0.25043 0.044745 0.010295 0.0065855 0.0051445 0.0041455 0.99775 26 coverage high_quality_coverage_count 0 3423714 1 1528816 2 1258756 3 1174304 4 1139761 5 1138139 6 1163100 7 1196795 8 1250713 9 1324972 10 1426082 11 1564093 12 1738673 13 1958445 14 2231833 15 2581341 16 3012906 17 3552743 18 4223409 19 5060572 20 6085692 21 7355180 22 8900332 23 10815010 24 13142106 25 15949213 26 19305391 27 23270293 28 27856645 29 33119247 30 39042607 31 45627405 32 52738593 33 60316392 34 68199987 35 76191249 36 84145350 37 91820636 38 98975001 39 105375987 40 110787261 41 115052240 42 117968434 43 119456228 44 119426455 45 117925796 46 114930999 47 110584044 48 105023632 49 98454303 50 91138532 51 83294889 52 75169626 53 66964308 54 58925500 55 51219786 56 43964070 57 37305761 58 31290393 59 25944156 60 21280312 61 17276028 62 13896582 63 11077445 64 8771101 65 6887294 66 5390179 67 4211700 68 3295174 69 2582518 70 2042518 71 1632346 72 1321403 73 1090922 74 917664 75 789924 76 692938 77 621420 78 562800 79 520433 80 484895 81 457718 82 435569 83 414102 84 396929 85 381365 86 367577 87 352702 88 340027 89 328868 90 316758 91 307822 92 297583 93 286957 94 277909 95 269015 96 259940 97 252184 98 242836 99 234351 100 226881 101 219460 102 212403 103 204523 104 197768 105 191579 106 185347 107 179849 108 174596 109 168943 110 163243 111 158908 112 153676 113 149043 114 145436 115 141265 116 137160 117 132358 118 129233 119 124906 120 122159 121 118686 122 115629 123 112658 124 109915 125 107034 126 104810 127 101906 128 99031 129 97774 130 95555 131 93634 132 91129 133 89702 134 87739 135 86592 136 84588 137 82605 138 81169 139 79527 140 77843 141 76388 142 74754 143 72927 144 71080 145 69522 146 68182 147 66834 148 65581 149 63976 150 62904 151 62135 152 60978 153 59213 154 58197 155 56918 156 55731 157 54644 158 53176 159 52532 160 50885 161 49735 162 48739 163 47846 164 46663 165 45431 166 45092 167 43788 168 43171 169 42625 170 42000 171 40666 172 40042 173 39163 174 38547 175 37788 176 37097 177 36789 178 36074 179 35504 180 34645 181 34094 182 33329 183 32328 184 32081 185 31796 186 30965 187 30883 188 30037 189 29663 190 29119 191 28830 192 28102 193 27724 194 27579 195 26724 196 26525 197 26029 198 25514 199 25147 200 25028 201 24444 202 24148 203 23698 204 23626 205 23018 206 22627 207 22470 208 22211 209 21722 210 21519 211 21119 212 20850 213 20742 214 19951 215 20204 216 20012 217 19619 218 19471 219 18902 220 18869 221 18412 222 18561 223 18014 224 17899 225 17765 226 17560 227 17430 228 17151 229 16951 230 16713 231 16672 232 16235 233 16118 234 16000 235 15950 236 15867 237 15497 238 15358 239 15147 240 15114 241 14960 242 14896 243 14681 244 14584 245 14708 246 14427 247 14236 248 13774 249 13952 250 2392105