#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i SGDP/LP6005592-DNA_E02.hs38DH/LP6005592-DNA_E02.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005592-DNA_E02.hs38DH/QCmetrics/LP6005592-DNA_E02.hs38DH.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 21.961 6.4648 22 4 0 0.016851 0.0020661 0.065662 0.0062949 0.00022965 0.091103 0.99913 0.99614 0.98253 0.90674 0.6615 0.31594 0.092684 0.0052645 0.001559 0.00080322 0.00053866 0.00040475 0.00031933 0.00025748 0.99655 25 coverage high_quality_coverage_count 0 133034 1 82840 2 96497 3 120363 4 153886 5 198283 6 267402 7 362658 8 510578 9 731912 10 1056414 11 1515095 12 2125254 13 2924163 14 3908391 15 5044072 16 6276690 17 7541106 18 8719504 19 9723044 20 10455692 21 10834947 22 10861531 23 10531293 24 9880358 25 8990283 26 7936642 27 6798631 28 5657501 29 4577728 30 3607753 31 2772052 32 2085964 33 1532018 34 1108050 35 788144 36 556139 37 388161 38 270042 39 189419 40 135835 41 100342 42 75804 43 59268 44 47008 45 38767 46 33088 47 28030 48 24409 49 21112 50 18334 51 16120 52 14261 53 12707 54 11465 55 10228 56 9328 57 8323 58 7539 59 6657 60 5989 61 5475 62 4802 63 4406 64 3999 65 3654 66 3373 67 3072 68 2806 69 2668 70 2443 71 2446 72 2304 73 2174 74 2145 75 1930 76 1836 77 1752 78 1668 79 1672 80 1643 81 1496 82 1403 83 1381 84 1241 85 1263 86 1144 87 1191 88 1149 89 1083 90 1009 91 1008 92 1016 93 1008 94 1000 95 947 96 881 97 869 98 821 99 848 100 747 101 718 102 714 103 663 104 665 105 642 106 637 107 638 108 602 109 592 110 584 111 561 112 515 113 539 114 482 115 476 116 481 117 523 118 479 119 491 120 476 121 484 122 437 123 408 124 396 125 408 126 393 127 417 128 374 129 395 130 389 131 381 132 397 133 368 134 364 135 332 136 314 137 312 138 299 139 324 140 293 141 277 142 320 143 268 144 264 145 297 146 274 147 285 148 262 149 245 150 272 151 258 152 239 153 227 154 220 155 201 156 213 157 232 158 177 159 220 160 197 161 228 162 185 163 212 164 195 165 191 166 185 167 179 168 169 169 180 170 173 171 157 172 151 173 163 174 176 175 177 176 154 177 158 178 134 179 144 180 112 181 133 182 117 183 130 184 121 185 127 186 114 187 144 188 128 189 133 190 108 191 124 192 137 193 129 194 127 195 116 196 101 197 119 198 113 199 100 200 123 201 102 202 118 203 109 204 111 205 122 206 103 207 106 208 94 209 80 210 110 211 96 212 98 213 118 214 80 215 86 216 94 217 87 218 82 219 90 220 91 221 81 222 71 223 100 224 81 225 73 226 79 227 76 228 54 229 56 230 63 231 64 232 48 233 39 234 62 235 55 236 74 237 47 238 46 239 52 240 46 241 59 242 50 243 59 244 64 245 43 246 56 247 72 248 52 249 45 250 4898