#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i SGDP/LP6005592-DNA_F01.hs38DH/LP6005592-DNA_F01.hs38DH.cram --algo AlignmentStat SGDP/LP6005592-DNA_F01.hs38DH/QCmetrics/LP6005592-DNA_F01.hs38DH.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	646276612	646276612	1.000000	0	630468751	0.975540	62434573466	590023208	58595018621	55078837580	0.000000	0.006211	0.005714	0.000207	100.000000	628679809	0.997163	0	0.500069	0.016736	0.000080	
SECOND_OF_PAIR	646276612	646276612	1.000000	0	629562552	0.974138	62192618595	588609869	58348492703	53961148513	0.000000	0.006719	0.006219	0.000209	100.000000	628679809	0.998598	0	0.500034	0.016970	0.001762	
PAIR	1292553224	1292553224	1.000000	0	1260031303	0.974839	124627192061	1178633077	116943511324	109039986093	0.000000	0.006465	0.005966	0.000208	100.000000	1257359618	0.997880	0	0.500051	0.016853	0.000921