#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005592-DNA_F01.hs38DH/LP6005592-DNA_F01.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005592-DNA_F01.hs38DH/QCmetrics/LP6005592-DNA_F01.hs38DH.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	2.5966	18.316	0	0	0	0.067314	0.0044283	0.058563	0.026972	0.41062	0.5679	0.14639	0.067717	0.038219	0.026245	0.02089	0.017938	0.01582	0.012931	0.011135	0.0099704	0.0090825	0.008346	0.0077568	0.0072477	0.10545	0	

coverage	high_quality_coverage_count	
0	20176235
1	822347
2	455346
3	328954
4	252887
5	196868
6	163554
7	135017
8	110782
9	91006
10	76769
11	65424
12	54963
13	46985
14	38876
15	32437
16	28343
17	25272
18	21463
19	19058
20	17152
21	14801
22	13575
23	12647
24	11610
25	11291
26	10643
27	9913
28	9321
29	8883
30	8391
31	7827
32	7403
33	6987
34	6737
35	6562
36	6328
37	6203
38	6140
39	5716
40	5358
41	4969
42	4628
43	4393
44	4280
45	4078
46	3980
47	3774
48	3640
49	3354
50	3208
51	3144
52	2893
53	2852
54	2773
55	2701
56	2645
57	2471
58	2503
59	2332
60	2365
61	2191
62	2155
63	2119
64	2078
65	2085
66	2094
67	2029
68	1965
69	1905
70	1812
71	1891
72	1824
73	1787
74	1714
75	1750
76	1665
77	1649
78	1666
79	1650
80	1575
81	1444
82	1479
83	1399
84	1393
85	1344
86	1356
87	1345
88	1313
89	1279
90	1299
91	1260
92	1192
93	1213
94	1252
95	1176
96	1175
97	1164
98	1161
99	1141
100	1075
101	1059
102	1117
103	1142
104	1052
105	1096
106	1098
107	1031
108	1043
109	959
110	1018
111	903
112	990
113	911
114	990
115	900
116	889
117	905
118	859
119	799
120	808
121	781
122	817
123	786
124	816
125	755
126	825
127	749
128	769
129	761
130	726
131	687
132	733
133	745
134	702
135	706
136	715
137	767
138	700
139	738
140	717
141	761
142	737
143	696
144	712
145	709
146	687
147	729
148	757
149	750
150	726
151	725
152	733
153	774
154	760
155	789
156	750
157	742
158	738
159	751
160	764
161	740
162	736
163	749
164	765
165	746
166	721
167	763
168	791
169	759
170	722
171	757
172	752
173	713
174	761
175	745
176	785
177	785
178	762
179	700
180	774
181	716
182	707
183	690
184	640
185	674
186	700
187	644
188	686
189	675
190	640
191	625
192	631
193	616
194	661
195	605
196	637
197	624
198	584
199	631
200	615
201	592
202	618
203	589
204	589
205	566
206	578
207	561
208	538
209	542
210	516
211	498
212	505
213	511
214	486
215	486
216	490
217	479
218	517
219	475
220	452
221	443
222	462
223	423
224	487
225	445
226	402
227	420
228	445
229	416
230	454
231	420
232	427
233	357
234	381
235	397
236	396
237	362
238	402
239	395
240	392
241	426
242	365
243	356
244	395
245	381
246	394
247	349
248	360
249	375
250	70538