#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005592-DNA_F03.hs38DH/LP6005592-DNA_F03.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005592-DNA_F03.hs38DH/QCmetrics/LP6005592-DNA_F03.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 45.599 13.694 45 6 0 0.017728 0.0015525 0.053128 0.0056333 0.01391 0.091951 0.9985 0.99668 0.99466 0.99188 0.98652 0.97415 0.94355 0.73471 0.32506 0.066259 0.01285 0.0073788 0.0058153 0.0047541 0.99755 26 coverage high_quality_coverage_count 0 4113378 1 1529842 2 1239524 3 1133248 4 1093627 5 1077157 6 1080808 7 1100317 8 1133349 9 1185520 10 1258095 11 1354354 12 1484157 13 1654509 14 1867314 15 2131942 16 2462512 17 2863117 18 3350144 19 3941348 20 4657896 21 5515620 22 6567363 23 7835132 24 9394187 25 11270230 26 13552130 27 16299546 28 19569488 29 23403590 30 27874502 31 33010176 32 38784570 33 45200627 34 52214301 35 59668496 36 67447439 37 75400840 38 83317701 39 90972785 40 98152485 41 104641859 42 110148441 43 114490747 44 117494664 45 119074946 46 119092943 47 117608290 48 114642975 49 110351486 50 104837633 51 98347336 52 91055988 53 83213584 54 75122075 55 66953592 56 58949543 57 51271456 58 44036075 59 37391996 60 31385794 61 26039006 62 21374834 63 17367439 64 13982259 65 11146932 66 8824513 67 6953290 68 5439386 69 4251178 70 3318323 71 2606394 72 2054448 73 1640416 74 1325664 75 1091664 76 917979 77 784669 78 683935 79 611577 80 554891 81 512209 82 478092 83 448288 84 426532 85 405471 86 389558 87 373873 88 359608 89 347976 90 335114 91 323953 92 313699 93 304230 94 294935 95 286171 96 277112 97 267463 98 260108 99 253198 100 245577 101 238208 102 230295 103 224357 104 216519 105 208859 106 203739 107 197693 108 193001 109 186889 110 182056 111 177770 112 172559 113 169017 114 164657 115 159562 116 155356 117 151154 118 146614 119 143901 120 139886 121 136628 122 132944 123 130813 124 127050 125 124490 126 120933 127 118827 128 114555 129 112692 130 110246 131 107530 132 104537 133 102911 134 100105 135 97137 136 95282 137 92580 138 91303 139 89283 140 86980 141 85527 142 83782 143 81026 144 79042 145 77677 146 75387 147 74123 148 72000 149 70533 150 69107 151 67697 152 66180 153 64072 154 62872 155 62180 156 60934 157 59214 158 58401 159 57080 160 55721 161 54081 162 53630 163 52399 164 51422 165 50478 166 49388 167 48313 168 47275 169 46458 170 45723 171 45201 172 44375 173 43895 174 42852 175 42519 176 41980 177 40949 178 40654 179 40328 180 39403 181 38613 182 38228 183 37310 184 37246 185 36787 186 35898 187 35425 188 34795 189 34434 190 33863 191 33463 192 33171 193 32940 194 32097 195 31885 196 31446 197 31581 198 30909 199 30643 200 30056 201 29916 202 29283 203 29151 204 28949 205 28348 206 28223 207 27765 208 27372 209 27252 210 26553 211 26672 212 26220 213 25864 214 25685 215 25070 216 25102 217 24814 218 24954 219 24479 220 24050 221 23812 222 23608 223 23490 224 23448 225 23110 226 22580 227 22586 228 22452 229 21985 230 21706 231 21474 232 21176 233 20897 234 20920 235 20301 236 20159 237 19794 238 19492 239 19283 240 19211 241 18811 242 18646 243 18568 244 18109 245 18169 246 18013 247 17846 248 17653 249 17537 250 2844487