#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005592-DNA_F03.hs38DH/LP6005592-DNA_F03.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005592-DNA_F03.hs38DH/QCmetrics/LP6005592-DNA_F03.hs38DH.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	2.9382	19.527	0	0	0	0.056611	0.0040543	0.049081	0.025522	0.42047	0.55574	0.15041	0.077884	0.047253	0.03259	0.024734	0.020149	0.01734	0.01403	0.01214	0.010819	0.0098998	0.009196	0.0085769	0.0080379	0.11365	1	

coverage	high_quality_coverage_count	
0	20081256
1	724468
2	425796
3	316322
4	247621
5	198196
6	163365
7	137251
8	120318
9	104864
10	88506
11	77595
12	68200
13	59374
14	52908
15	46801
16	41354
17	36228
18	32201
19	29120
20	26162
21	23647
22	21567
23	19448
24	17541
25	15920
26	14416
27	13067
28	11813
29	11179
30	10561
31	9736
32	9042
33	8438
34	7775
35	7312
36	6976
37	6593
38	6058
39	5745
40	5216
41	4944
42	4844
43	4669
44	4490
45	4336
46	4376
47	4022
48	3901
49	3883
50	3739
51	3515
52	3489
53	3256
54	3166
55	3056
56	2979
57	2803
58	2660
59	2558
60	2456
61	2434
62	2288
63	2224
64	2222
65	2031
66	2145
67	1981
68	2060
69	1876
70	1801
71	1841
72	1863
73	1722
74	1658
75	1623
76	1613
77	1592
78	1497
79	1426
80	1504
81	1507
82	1485
83	1517
84	1431
85	1439
86	1508
87	1487
88	1382
89	1373
90	1320
91	1286
92	1359
93	1246
94	1295
95	1268
96	1312
97	1255
98	1261
99	1139
100	1156
101	1181
102	1198
103	1165
104	1161
105	1109
106	1179
107	1127
108	1069
109	1060
110	981
111	1026
112	1036
113	973
114	909
115	879
116	908
117	904
118	893
119	917
120	871
121	873
122	878
123	858
124	842
125	833
126	868
127	854
128	860
129	836
130	793
131	853
132	794
133	797
134	804
135	785
136	787
137	807
138	704
139	858
140	813
141	783
142	825
143	781
144	791
145	826
146	796
147	800
148	801
149	782
150	904
151	850
152	815
153	856
154	860
155	845
156	807
157	831
158	862
159	825
160	874
161	863
162	857
163	879
164	828
165	829
166	816
167	860
168	733
169	746
170	781
171	767
172	822
173	765
174	739
175	730
176	719
177	746
178	681
179	633
180	678
181	615
182	637
183	599
184	573
185	588
186	607
187	585
188	577
189	613
190	587
191	573
192	499
193	571
194	519
195	528
196	507
197	520
198	514
199	487
200	474
201	479
202	480
203	496
204	478
205	464
206	536
207	490
208	462
209	521
210	452
211	437
212	455
213	455
214	432
215	456
216	444
217	468
218	439
219	420
220	400
221	416
222	392
223	424
224	428
225	411
226	425
227	419
228	410
229	380
230	451
231	421
232	405
233	404
234	425
235	397
236	400
237	390
238	395
239	412
240	402
241	408
242	406
243	397
244	411
245	422
246	390
247	401
248	393
249	382
250	87547