#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005619-DNA_C01.hs38DH/LP6005619-DNA_C01.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005619-DNA_C01.hs38DH/QCmetrics/LP6005619-DNA_C01.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 28.564 26.905 24 4 0 0.070837 0.0014716 0.052128 0.0087121 0.31434 0.44749 0.99703 0.99429 0.98724 0.94857 0.7909 0.4848 0.21251 0.054759 0.04119 0.03593 0.032182 0.028813 0.025506 0.022393 0.99508 23 coverage high_quality_coverage_count 0 70184 1 17781 2 15267 3 15359 4 16255 5 18335 6 22559 7 29951 8 39898 9 56036 10 80330 11 116138 12 164406 13 232260 14 320914 15 435338 16 572345 17 731938 18 905419 19 1081733 20 1249438 21 1389876 22 1492549 23 1548329 24 1554820 25 1515441 26 1431055 27 1313980 28 1167758 29 1007661 30 850819 31 702309 32 565866 33 448383 34 347309 35 265122 36 200319 37 149917 38 113505 39 85159 40 64614 41 51205 42 40805 43 34047 44 28698 45 24945 46 21929 47 19862 48 18033 49 16584 50 15425 51 14639 52 13668 53 12917 54 12450 55 11666 56 11421 57 11124 58 10630 59 10368 60 9922 61 9546 62 9399 63 9223 64 8967 65 8485 66 8408 67 8302 68 8200 69 8158 70 8065 71 7997 72 8139 73 7994 74 7946 75 7976 76 7898 77 7860 78 7800 79 7937 80 7770 81 7784 82 8003 83 7879 84 7779 85 7754 86 7818 87 7813 88 7801 89 7779 90 7581 91 7736 92 7315 93 7434 94 7323 95 7151 96 7042 97 7237 98 7540 99 7215 100 7345 101 7429 102 7716 103 7594 104 7331 105 7422 106 7479 107 7394 108 7363 109 7288 110 7123 111 6864 112 6671 113 6629 114 6501 115 6180 116 6010 117 5717 118 5621 119 5285 120 5164 121 4975 122 4741 123 4415 124 4352 125 4042 126 4049 127 3741 128 3663 129 3485 130 3341 131 3209 132 2961 133 2872 134 2771 135 2559 136 2562 137 2340 138 2239 139 2220 140 2125 141 2180 142 2050 143 2003 144 1850 145 1816 146 1848 147 1683 148 1689 149 1587 150 1580 151 1622 152 1530 153 1489 154 1442 155 1390 156 1370 157 1413 158 1328 159 1340 160 1336 161 1276 162 1210 163 1241 164 1249 165 1200 166 1215 167 1097 168 1150 169 1087 170 1079 171 1105 172 1139 173 1043 174 1072 175 1015 176 963 177 988 178 987 179 995 180 1019 181 1025 182 1045 183 1106 184 1074 185 1003 186 950 187 974 188 940 189 957 190 911 191 937 192 906 193 914 194 944 195 928 196 851 197 863 198 847 199 839 200 833 201 792 202 756 203 776 204 758 205 728 206 711 207 702 208 694 209 654 210 656 211 707 212 724 213 692 214 666 215 657 216 599 217 675 218 648 219 624 220 639 221 594 222 575 223 615 224 609 225 625 226 646 227 543 228 575 229 598 230 575 231 594 232 588 233 628 234 570 235 558 236 561 237 595 238 573 239 638 240 629 241 580 242 617 243 553 244 618 245 587 246 539 247 600 248 561 249 531 250 216044