#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005677-DNA_A02.hs38DH/LP6005677-DNA_A02.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005677-DNA_A02.hs38DH/QCmetrics/LP6005677-DNA_A02.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 35.979 11.949 36 5 0 0.023088 0.00099022 0.043868 0.0040549 0.014921 0.086922 0.99848 0.99605 0.99178 0.98429 0.96715 0.91803 0.79044 0.30726 0.042939 0.0098599 0.006644 0.0050956 0.0040626 0.0033256 0.99712 25 coverage high_quality_coverage_count 0 4186973 1 1750746 2 1572954 3 1604192 4 1730699 5 1899249 6 2103714 7 2333648 8 2574843 9 2841062 10 3156801 11 3533669 12 3988856 13 4579029 14 5318745 15 6253284 16 7451279 17 8981891 18 10951512 19 13462354 20 16691182 21 20763896 22 25849467 23 32092388 24 39573288 25 48348284 26 58329338 27 69385445 28 81186568 29 93372813 30 105406101 31 116785641 32 126839035 33 135133918 34 141168163 35 144603823 36 145265916 37 143108567 38 138304247 39 131130790 40 121981868 41 111418136 42 99886653 43 87975966 44 76164150 45 64815166 46 54250816 47 44671252 48 36227845 49 28964937 50 22816293 51 17752466 52 13654886 53 10403009 54 7879855 55 5938285 56 4472815 57 3386081 58 2588671 59 2007200 60 1592617 61 1293545 62 1079595 63 924074 64 811843 65 727033 66 665430 67 617540 68 579352 69 546031 70 518426 71 493165 72 470109 73 449697 74 428420 75 411294 76 393177 77 378417 78 362465 79 349843 80 334005 81 321585 82 308801 83 297011 84 288471 85 277142 86 267254 87 256594 88 248071 89 239877 90 231961 91 224259 92 216987 93 209384 94 204634 95 198243 96 192270 97 187290 98 182669 99 177447 100 173344 101 168077 102 163863 103 160376 104 156112 105 152710 106 149366 107 145122 108 141207 109 136884 110 134276 111 129852 112 125755 113 122843 114 119414 115 116419 116 113608 117 110332 118 107537 119 105033 120 101477 121 99114 122 96198 123 93525 124 91347 125 88340 126 85821 127 83126 128 80946 129 78907 130 76418 131 74252 132 72539 133 70826 134 68339 135 66995 136 64975 137 63142 138 62253 139 60632 140 58654 141 57062 142 55369 143 54129 144 53025 145 51152 146 50145 147 49131 148 48697 149 47582 150 45945 151 45214 152 44145 153 43506 154 42596 155 41253 156 40619 157 39859 158 39239 159 38663 160 37582 161 36972 162 36429 163 35691 164 34601 165 34432 166 33650 167 33598 168 32793 169 32158 170 31407 171 31127 172 30514 173 30143 174 29738 175 29029 176 28583 177 27895 178 27266 179 27470 180 26873 181 26483 182 25983 183 25522 184 25346 185 24749 186 24360 187 23631 188 23733 189 23370 190 23131 191 22913 192 22653 193 21840 194 21557 195 21267 196 20458 197 20406 198 20271 199 20029 200 20036 201 19351 202 19099 203 18880 204 18616 205 18584 206 18165 207 17857 208 17753 209 17755 210 17243 211 17134 212 16763 213 16611 214 16329 215 15992 216 16054 217 15764 218 15573 219 15177 220 15112 221 14954 222 14611 223 14381 224 14393 225 14291 226 14200 227 13890 228 13722 229 13607 230 13497 231 13664 232 13052 233 13502 234 13073 235 12997 236 13026 237 13001 238 12702 239 12647 240 12423 241 12301 242 12326 243 12203 244 11941 245 11934 246 11586 247 11426 248 11237 249 11378 250 2033883