#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005677-DNA_A02.hs38DH/LP6005677-DNA_A02.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005677-DNA_A02.hs38DH/QCmetrics/LP6005677-DNA_A02.hs38DH.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	2.4276	17.574	0	0	0	0.057219	0.0035437	0.039718	0.02495	0.39983	0.52527	0.14215	0.066284	0.036518	0.024267	0.018771	0.015839	0.013962	0.011595	0.010187	0.0092122	0.0085027	0.0079089	0.0073994	0.0069258	0.1038	0	

coverage	high_quality_coverage_count	
0	20276431
1	752891
2	452072
3	331728
4	256511
5	201752
6	163303
7	136226
8	110565
9	91734
10	77260
11	66536
12	56225
13	48003
14	41526
15	35150
16	29099
17	24500
18	21864
19	19305
20	16915
21	14942
22	13883
23	12285
24	11271
25	10226
26	9457
27	8682
28	8326
29	7668
30	7146
31	6850
32	6418
33	5953
34	5498
35	5280
36	4921
37	4944
38	4522
39	4417
40	4008
41	3935
42	3658
43	3531
44	3362
45	3211
46	3121
47	2846
48	2850
49	2759
50	2709
51	2717
52	2524
53	2384
54	2282
55	2168
56	2207
57	2060
58	2034
59	1962
60	1853
61	1744
62	1694
63	1642
64	1668
65	1631
66	1659
67	1661
68	1640
69	1576
70	1493
71	1410
72	1515
73	1550
74	1432
75	1347
76	1347
77	1319
78	1293
79	1330
80	1230
81	1233
82	1198
83	1293
84	1234
85	1156
86	1183
87	1219
88	1176
89	1122
90	1217
91	1212
92	1128
93	1175
94	1210
95	1110
96	1028
97	1066
98	1010
99	1037
100	1043
101	1081
102	1092
103	1038
104	1001
105	1051
106	1019
107	996
108	967
109	1000
110	980
111	953
112	898
113	887
114	997
115	934
116	986
117	900
118	927
119	987
120	934
121	949
122	834
123	879
124	908
125	899
126	862
127	906
128	886
129	820
130	834
131	850
132	830
133	880
134	813
135	815
136	787
137	811
138	819
139	819
140	801
141	711
142	809
143	850
144	832
145	813
146	789
147	795
148	824
149	790
150	826
151	785
152	843
153	733
154	851
155	847
156	857
157	868
158	894
159	932
160	896
161	880
162	868
163	852
164	786
165	848
166	809
167	754
168	774
169	746
170	712
171	716
172	740
173	680
174	698
175	720
176	696
177	628
178	674
179	607
180	593
181	604
182	580
183	593
184	569
185	571
186	560
187	527
188	512
189	579
190	504
191	493
192	526
193	499
194	568
195	525
196	545
197	510
198	525
199	546
200	521
201	487
202	486
203	524
204	519
205	507
206	511
207	512
208	498
209	503
210	496
211	514
212	444
213	456
214	490
215	465
216	439
217	428
218	456
219	411
220	441
221	432
222	403
223	406
224	406
225	370
226	367
227	367
228	394
229	375
230	371
231	362
232	316
233	329
234	346
235	348
236	319
237	373
238	333
239	331
240	323
241	293
242	290
243	332
244	290
245	312
246	302
247	297
248	315
249	297
250	64259