#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i SGDP/LP6005677-DNA_B02.hs38DH/LP6005677-DNA_B02.hs38DH.cram --algo AlignmentStat SGDP/LP6005677-DNA_B02.hs38DH/QCmetrics/LP6005677-DNA_B02.hs38DH.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	733251977	733251977	1.000000	0	725541137	0.989484	72016243481	676915822	67322785997	63882203713	0.000000	0.004273	0.003806	0.000189	100.000000	723660636	0.997408	0	0.500082	0.016116	0.000002	
SECOND_OF_PAIR	733251977	733251977	1.000000	0	723822773	0.987141	71615563828	674765077	66930909275	61595763655	0.000000	0.005781	0.005320	0.000187	100.000000	723660636	0.999776	0	0.499962	0.016230	0.000025	
PAIR	1466503954	1466503954	1.000000	0	1449363910	0.988312	143631807309	1351680899	134253695272	125477967368	0.000000	0.005025	0.004561	0.000188	100.000000	1447321272	0.998591	0	0.500022	0.016173	0.000014