#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005677-DNA_B02.hs38DH/LP6005677-DNA_B02.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005677-DNA_B02.hs38DH/QCmetrics/LP6005677-DNA_B02.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 44.999 13.617 45 6 0 0.015896 0.00097667 0.064179 0.0051212 0.012578 0.098751 0.99885 0.99708 0.99481 0.99156 0.9855 0.97207 0.93972 0.71747 0.29688 0.056405 0.01216 0.0075709 0.0059805 0.0048775 0.99789 27 coverage high_quality_coverage_count 0 3170303 1 1390598 2 1192604 3 1140002 4 1136481 5 1153262 6 1185401 7 1230668 8 1293957 9 1377429 10 1476091 11 1598635 12 1748335 13 1932803 14 2170909 15 2459531 16 2803536 17 3237686 18 3760971 19 4391211 20 5148482 21 6056352 22 7150181 23 8478897 24 10064351 25 12004718 26 14374529 27 17216272 28 20632066 29 24683898 30 29425687 31 34906013 32 41100788 33 48030341 34 55554619 35 63594077 36 71975331 37 80474260 38 88855589 39 96815245 40 104131304 41 110483188 42 115664662 43 119424717 44 121623869 45 122180826 46 121075716 47 118379252 48 114172636 49 108632242 50 101986447 51 94507829 52 86409699 53 77965201 54 69427592 55 61078563 56 53044337 57 45502900 58 38565112 59 32318451 60 26781971 61 21952112 62 17808170 63 14305503 64 11394655 65 9006384 66 7085680 67 5540272 68 4325681 69 3382544 70 2650685 71 2095571 72 1675315 73 1357561 74 1122306 75 947772 76 816512 77 717560 78 642558 79 585476 80 543325 81 509826 82 482470 83 457079 84 436513 85 418441 86 401760 87 387542 88 373096 89 360106 90 348598 91 336361 92 326817 93 316126 94 306789 95 296092 96 288104 97 279186 98 270523 99 262397 100 253059 101 246109 102 237130 103 230390 104 223636 105 217183 106 210578 107 204825 108 199096 109 192650 110 186511 111 181162 112 176660 113 171865 114 166902 115 162410 116 158615 117 154366 118 149783 119 146515 120 142804 121 139207 122 136587 123 133370 124 130242 125 127823 126 124495 127 122006 128 119526 129 115946 130 114466 131 112266 132 109898 133 107850 134 105322 135 103261 136 101163 137 99550 138 97295 139 95591 140 93472 141 91670 142 90011 143 88307 144 86054 145 84271 146 83059 147 81019 148 79288 149 78247 150 76309 151 74529 152 73081 153 71404 154 69694 155 68529 156 67136 157 64564 158 63745 159 62947 160 61627 161 59843 162 59083 163 57682 164 56715 165 55251 166 53764 167 52687 168 52322 169 51003 170 50088 171 49249 172 47900 173 47384 174 46966 175 45890 176 44887 177 44460 178 43474 179 43173 180 42129 181 41420 182 40569 183 40462 184 39623 185 38670 186 38080 187 37641 188 36893 189 36203 190 35419 191 35365 192 34750 193 34552 194 33679 195 33524 196 32909 197 32593 198 32218 199 31713 200 31424 201 31014 202 30652 203 29945 204 29907 205 29327 206 29200 207 28708 208 28107 209 27949 210 27349 211 27067 212 26971 213 26378 214 26373 215 25562 216 25455 217 24988 218 24654 219 24582 220 24442 221 24140 222 23571 223 23633 224 22751 225 22386 226 22348 227 21947 228 21572 229 21157 230 20967 231 20766 232 20333 233 20260 234 19973 235 19859 236 19641 237 19264 238 19195 239 19147 240 18760 241 18690 242 18158 243 17985 244 17865 245 17815 246 17298 247 16998 248 17029 249 16861 250 2735561