#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005677-DNA_D01.hs38DH/LP6005677-DNA_D01.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005677-DNA_D01.hs38DH/QCmetrics/LP6005677-DNA_D01.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 25.733 26.994 20 4 0 0.039343 0.0015157 0.031568 0.0076961 0.2632 0.34332 0.99949 0.99756 0.97834 0.83679 0.51827 0.27378 0.17888 0.093474 0.048034 0.034361 0.029387 0.026315 0.023925 0.021667 0.99683 25 coverage high_quality_coverage_count 0 12157 1 6657 2 8563 3 12053 4 18309 5 27767 6 43573 7 72060 8 118157 9 192768 10 302668 11 454367 12 647457 13 859443 14 1081780 15 1294320 16 1462243 17 1572788 18 1616764 19 1582471 20 1481448 21 1338005 22 1165103 23 984386 24 809986 25 654635 26 524176 27 423916 28 346892 29 293336 30 256325 31 233172 32 218641 33 208716 34 200086 35 195428 36 188828 37 181296 38 172623 39 163608 40 154028 41 144375 42 133863 43 123445 44 112762 45 101386 46 90858 47 80452 48 71099 49 61777 50 53774 51 47624 52 41119 53 36120 54 32085 55 27975 56 25032 57 22088 58 19587 59 17769 60 16064 61 14961 62 13374 63 12536 64 11705 65 11115 66 10104 67 9712 68 9139 69 8853 70 8403 71 8080 72 7846 73 7775 74 7348 75 7130 76 6803 77 6630 78 6527 79 6082 80 6095 81 5987 82 6002 83 5676 84 5623 85 5497 86 5411 87 5458 88 5296 89 5440 90 5465 91 5295 92 5299 93 5267 94 5193 95 5345 96 5436 97 5352 98 5244 99 5469 100 5451 101 5422 102 5643 103 5565 104 5744 105 5578 106 5701 107 5764 108 5703 109 5968 110 5891 111 5771 112 5821 113 5843 114 5887 115 5958 116 5568 117 5773 118 5771 119 5565 120 5546 121 5525 122 5353 123 5076 124 4948 125 4929 126 4742 127 4669 128 4595 129 4286 130 4233 131 4141 132 3973 133 3849 134 3792 135 3746 136 3613 137 3557 138 3386 139 3452 140 3203 141 3054 142 2898 143 2770 144 2644 145 2473 146 2384 147 2278 148 2221 149 2200 150 2171 151 2069 152 1882 153 1901 154 1875 155 1837 156 1754 157 1799 158 1596 159 1634 160 1655 161 1608 162 1479 163 1461 164 1413 165 1428 166 1426 167 1343 168 1342 169 1296 170 1343 171 1196 172 1210 173 1144 174 1150 175 1080 176 1166 177 1098 178 1059 179 1077 180 1094 181 998 182 972 183 981 184 1005 185 970 186 918 187 965 188 894 189 873 190 885 191 851 192 839 193 858 194 861 195 792 196 773 197 787 198 757 199 760 200 728 201 694 202 686 203 645 204 753 205 679 206 682 207 692 208 705 209 683 210 715 211 698 212 684 213 690 214 741 215 712 216 687 217 697 218 671 219 646 220 621 221 673 222 657 223 645 224 660 225 644 226 659 227 672 228 651 229 634 230 701 231 674 232 669 233 613 234 597 235 637 236 590 237 607 238 625 239 613 240 647 241 611 242 572 243 578 244 565 245 585 246 571 247 530 248 588 249 516 250 189388