#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005677-DNA_F01.hs38DH/LP6005677-DNA_F01.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005677-DNA_F01.hs38DH/QCmetrics/LP6005677-DNA_F01.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 38.686 12.192 38 5 0 0.014615 0.0019981 0.049771 0.0039058 0.01396 0.08425 0.9987 0.99632 0.9928 0.98766 0.97714 0.94812 0.86517 0.44319 0.085894 0.013174 0.0071179 0.005443 0.0043259 0.0035382 0.99741 26 coverage high_quality_coverage_count 0 3581073 1 1684662 2 1578530 3 1601684 4 1667252 5 1739961 6 1826148 7 1918418 8 2023044 9 2157128 10 2309705 11 2510065 12 2758407 13 3075918 14 3490023 15 4019874 16 4690149 17 5540846 18 6630077 19 8028588 20 9822329 21 12158156 22 15153577 23 18938483 24 23666197 25 29457309 26 36397513 27 44505496 28 53709276 29 63864306 30 74771712 31 86071034 32 97363052 33 108161865 34 117975559 35 126371225 36 132985703 37 137408428 38 139466473 39 139024621 40 136200971 41 131106383 42 124061886 43 115463994 44 105661217 45 95099397 46 84263417 47 73482722 48 63102156 49 53385639 50 44476318 51 36569433 52 29656622 53 23733144 54 18782480 55 14697621 56 11381566 57 8750512 58 6687818 59 5095468 60 3880788 61 2966670 62 2283906 63 1784595 64 1420599 65 1154928 66 960770 67 822292 68 722704 69 645636 70 589701 71 545532 72 510021 73 481965 74 457993 75 436658 76 419599 77 402106 78 385926 79 373124 80 359990 81 346077 82 335083 83 323023 84 311136 85 300082 86 288641 87 277620 88 268499 89 259739 90 251945 91 242771 92 233969 93 226595 94 219302 95 210418 96 204626 97 197724 98 191322 99 185699 100 179662 101 173868 102 169080 103 163680 104 159251 105 154420 106 149409 107 146098 108 140990 109 136586 110 133386 111 129190 112 125653 113 122313 114 118519 115 115732 116 112376 117 110120 118 107129 119 105397 120 102233 121 100149 122 98146 123 95847 124 93897 125 91738 126 90067 127 87613 128 85397 129 83734 130 81956 131 80643 132 78859 133 76737 134 75610 135 73881 136 72053 137 70617 138 69027 139 67799 140 66540 141 65244 142 63819 143 62307 144 61452 145 60281 146 58347 147 57710 148 56321 149 54964 150 54229 151 52792 152 51823 153 51086 154 49893 155 49095 156 48300 157 47537 158 46435 159 45863 160 45172 161 44097 162 43448 163 43017 164 41861 165 40996 166 39969 167 39493 168 38396 169 38052 170 37942 171 36730 172 36216 173 35321 174 34847 175 34057 176 33745 177 33335 178 32762 179 32107 180 31380 181 31331 182 30794 183 30099 184 29450 185 29351 186 29008 187 28092 188 27962 189 27116 190 26953 191 26404 192 26107 193 26182 194 25674 195 25112 196 24798 197 24631 198 24151 199 23780 200 23258 201 22818 202 22710 203 22165 204 22313 205 21766 206 21425 207 21159 208 20769 209 20446 210 20198 211 19938 212 19542 213 19429 214 19100 215 19171 216 18537 217 18238 218 17902 219 18109 220 17461 221 17164 222 17091 223 16758 224 16697 225 16416 226 16151 227 15874 228 15719 229 15497 230 15121 231 14996 232 14993 233 14800 234 14595 235 14294 236 14327 237 14224 238 13858 239 13921 240 13713 241 13610 242 13267 243 12811 244 12926 245 12673 246 12834 247 12759 248 12436 249 12137 250 2032026