#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005677-DNA_F01.hs38DH/LP6005677-DNA_F01.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005677-DNA_F01.hs38DH/QCmetrics/LP6005677-DNA_F01.hs38DH.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	2.5359	17.703	0	0	0	0.051359	0.0046852	0.044808	0.02545	0.40171	0.52801	0.14519	0.069894	0.039642	0.027026	0.020869	0.017419	0.015306	0.012577	0.010944	0.0097551	0.0088617	0.0081373	0.007507	0.006997	0.10674	0	

coverage	high_quality_coverage_count	
0	20204648
1	756028
2	445490
3	327084
4	251063
5	202812
6	166047
7	136380
8	114066
9	95740
10	79848
11	68558
12	57414
13	49924
14	42464
15	36185
16	32781
17	28510
18	25194
19	22854
20	20094
21	18202
22	16064
23	14226
24	12960
25	11624
26	10318
27	9841
28	9345
29	8809
30	8099
31	7447
32	7116
33	6951
34	6669
35	6177
36	5907
37	5589
38	5318
39	5237
40	4825
41	4492
42	4399
43	4216
44	3900
45	3665
46	3362
47	3342
48	3144
49	3247
50	3177
51	3001
52	3008
53	3078
54	2812
55	2646
56	2748
57	2686
58	2549
59	2401
60	2515
61	2358
62	2259
63	2191
64	2072
65	2014
66	1989
67	1927
68	1899
69	1892
70	1846
71	1876
72	1761
73	1726
74	1617
75	1783
76	1637
77	1640
78	1644
79	1593
80	1549
81	1602
82	1533
83	1439
84	1473
85	1472
86	1511
87	1468
88	1432
89	1419
90	1298
91	1255
92	1239
93	1178
94	1160
95	1220
96	1203
97	1176
98	1160
99	1164
100	1134
101	1103
102	1041
103	1139
104	1146
105	1120
106	1124
107	1124
108	1106
109	1033
110	1061
111	1058
112	1062
113	1045
114	1081
115	1010
116	1027
117	1015
118	1043
119	1115
120	1065
121	1025
122	1033
123	1092
124	1068
125	1090
126	1040
127	1056
128	977
129	995
130	956
131	996
132	1021
133	973
134	972
135	983
136	904
137	945
138	935
139	919
140	926
141	948
142	905
143	914
144	930
145	999
146	843
147	903
148	828
149	827
150	837
151	849
152	831
153	791
154	780
155	737
156	690
157	646
158	690
159	674
160	709
161	681
162	680
163	718
164	718
165	672
166	640
167	651
168	626
169	660
170	603
171	614
172	619
173	597
174	581
175	551
176	572
177	571
178	538
179	560
180	553
181	533
182	554
183	546
184	526
185	498
186	547
187	546
188	541
189	548
190	524
191	536
192	549
193	544
194	532
195	481
196	498
197	496
198	520
199	493
200	498
201	469
202	477
203	492
204	462
205	467
206	464
207	438
208	405
209	391
210	418
211	377
212	376
213	371
214	376
215	352
216	391
217	331
218	373
219	349
220	321
221	374
222	376
223	331
224	341
225	353
226	334
227	296
228	340
229	310
230	291
231	289
232	266
233	312
234	295
235	278
236	260
237	267
238	251
239	265
240	280
241	256
242	268
243	287
244	280
245	265
246	214
247	222
248	223
249	223
250	67133