#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/SS6004467.hs38DH/SS6004467.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004467.hs38DH/QCmetrics/SS6004467.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 23.502 29.294 18 4 0 0.1424 0.0014713 0.038924 0.00088912 0.35159 0.53526 0.99839 0.99011 0.94082 0.74428 0.41794 0.18226 0.089919 0.051357 0.042488 0.037837 0.034359 0.031073 0.027703 0.024251 0.99096 20 coverage high_quality_coverage_count 0 38110 1 33245 2 39721 3 52456 4 70243 5 99556 6 145366 7 208054 8 297148 9 415016 10 561378 11 738062 12 928851 13 1119281 14 1297684 15 1447067 16 1548507 17 1601696 18 1590981 19 1525365 20 1418537 21 1275945 22 1118669 23 957417 24 800038 25 652609 26 525442 27 416331 28 329362 29 258852 30 202178 31 158840 32 125078 33 100441 34 81506 35 66939 36 55154 37 46631 38 39646 39 35066 40 30859 41 27725 42 24888 43 22540 44 20726 45 18986 46 17869 47 16542 48 15259 49 14236 50 13183 51 12743 52 12167 53 11486 54 10945 55 10618 56 10367 57 9891 58 9339 59 9190 60 8701 61 8717 62 8548 63 8286 64 8249 65 8325 66 7941 67 7935 68 7708 69 7801 70 7659 71 7701 72 7722 73 7552 74 7721 75 7961 76 7812 77 7773 78 7849 79 7923 80 7856 81 7827 82 7889 83 7978 84 8098 85 8123 86 8084 87 8080 88 7923 89 7785 90 7899 91 8040 92 8066 93 8070 94 8265 95 8199 96 8127 97 8523 98 8232 99 8180 100 8058 101 8184 102 7924 103 7771 104 7712 105 7602 106 7432 107 7127 108 7024 109 6949 110 6499 111 6415 112 6203 113 6203 114 5849 115 5833 116 5707 117 5491 118 5276 119 5118 120 4896 121 4949 122 4636 123 4435 124 4335 125 4185 126 3908 127 3789 128 3748 129 3507 130 3215 131 3120 132 2966 133 2757 134 2750 135 2643 136 2500 137 2489 138 2382 139 2379 140 2317 141 2304 142 2284 143 2198 144 2180 145 2053 146 1968 147 1976 148 1907 149 1816 150 1830 151 1791 152 1721 153 1739 154 1683 155 1638 156 1615 157 1611 158 1587 159 1611 160 1496 161 1505 162 1466 163 1516 164 1453 165 1449 166 1348 167 1357 168 1360 169 1386 170 1341 171 1326 172 1309 173 1280 174 1209 175 1217 176 1161 177 1263 178 1225 179 1192 180 1154 181 1152 182 1108 183 1126 184 1117 185 1086 186 1049 187 1061 188 1070 189 983 190 1044 191 1048 192 1052 193 1070 194 948 195 993 196 1042 197 992 198 986 199 958 200 935 201 945 202 930 203 881 204 1002 205 921 206 919 207 931 208 891 209 904 210 924 211 872 212 897 213 849 214 829 215 819 216 812 217 893 218 808 219 815 220 827 221 814 222 830 223 795 224 756 225 733 226 757 227 818 228 744 229 737 230 702 231 767 232 712 233 711 234 673 235 703 236 701 237 683 238 698 239 715 240 670 241 709 242 675 243 688 244 653 245 665 246 656 247 626 248 666 249 618 250 244228