#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i SGDP/SS6004468.hs38DH/SS6004468.hs38DH.cram --algo AlignmentStat SGDP/SS6004468.hs38DH/QCmetrics/SS6004468.hs38DH.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	688909405	688909405	1.000000	0	678626152	0.985073	67373198850	627549148	62491660391	60837576517	0.000000	0.003516	0.002820	0.000200	100.000000	676551650	0.996943	0	0.500055	0.027906	0.000000	
SECOND_OF_PAIR	688909405	688909405	1.000000	0	676637611	0.982187	66942166018	625244638	62081110496	58933395168	0.000000	0.005631	0.004955	0.000202	100.000000	676551650	0.999873	0	0.499995	0.028292	0.000025	
PAIR	1377818810	1377818810	1.000000	0	1355263763	0.983630	134315364868	1252793786	124572770887	119770971685	0.000000	0.004570	0.003884	0.000201	100.000000	1353103300	0.998406	0	0.500025	0.028099	0.000013