#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/SS6004468.hs38DH/SS6004468.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004468.hs38DH/QCmetrics/SS6004468.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 41.364 14.333 41 7 0 0.055026 0.0010723 0.03534 0.0012964 0.014906 0.10764 0.99788 0.99433 0.98995 0.98251 0.96763 0.93628 0.86895 0.55959 0.19957 0.044334 0.013206 0.0078791 0.0058595 0.0046157 0.99597 24 coverage high_quality_coverage_count 0 5821934 1 2988683 2 2421996 3 2207094 4 2134933 5 2141991 6 2211135 7 2352088 8 2545134 9 2799420 10 3112485 11 3513311 12 3997912 13 4564769 14 5240670 15 6027437 16 6937177 17 8005238 18 9239484 19 10676807 20 12382953 21 14400854 22 16798888 23 19622963 24 22943521 25 26828377 26 31307111 27 36401092 28 42120307 29 48385705 30 55123764 31 62210539 32 69479007 33 76750354 34 83792219 35 90425717 36 96395966 37 101522420 38 105695140 39 108703408 40 110454897 41 110908223 42 110081750 43 107968223 44 104723336 45 100465751 46 95338578 47 89565066 48 83245956 49 76575768 50 69745816 51 62944087 52 56277362 53 49868066 54 43805877 55 38165835 56 32979303 57 28290876 58 24101663 59 20401790 60 17160466 61 14359605 62 11957389 63 9916916 64 8198786 65 6773211 66 5583931 67 4608825 68 3813267 69 3164312 70 2643365 71 2218805 72 1878408 73 1607832 74 1388883 75 1214194 76 1073119 77 958594 78 866116 79 789586 80 727168 81 676325 82 629527 83 587608 84 553677 85 524640 86 497947 87 472702 88 450913 89 429288 90 410421 91 391977 92 375408 93 359226 94 345251 95 331779 96 318580 97 306963 98 295003 99 283442 100 273234 101 262532 102 253170 103 244800 104 235273 105 227279 106 220160 107 212510 108 205306 109 199192 110 192288 111 186227 112 180123 113 174264 114 169543 115 164126 116 159331 117 155863 118 151623 119 148513 120 142872 121 140298 122 136268 123 132530 124 129087 125 125343 126 122245 127 118090 128 115010 129 112165 130 109993 131 107595 132 104282 133 101519 134 99066 135 96092 136 94422 137 91909 138 90274 139 88255 140 86119 141 83939 142 81875 143 79523 144 78048 145 76692 146 74487 147 72926 148 71059 149 69775 150 68122 151 66253 152 64913 153 63586 154 62106 155 60810 156 59489 157 58860 158 57719 159 55876 160 55097 161 53898 162 52647 163 51982 164 50847 165 50127 166 49163 167 48325 168 47554 169 46417 170 44842 171 44375 172 43920 173 43251 174 42379 175 41654 176 41160 177 40699 178 40067 179 39439 180 38659 181 38500 182 37834 183 36874 184 36235 185 35844 186 35194 187 34474 188 33935 189 33147 190 32897 191 32481 192 31464 193 31154 194 30844 195 30408 196 29607 197 29330 198 28525 199 28169 200 27677 201 27292 202 26980 203 26567 204 25570 205 25783 206 25201 207 24927 208 24341 209 24231 210 23879 211 23313 212 22903 213 22794 214 22527 215 21887 216 21935 217 21453 218 21187 219 20921 220 20689 221 20110 222 20004 223 19786 224 19775 225 19304 226 19127 227 18690 228 18500 229 18473 230 18302 231 17776 232 17661 233 17611 234 17378 235 17277 236 17220 237 17073 238 16677 239 16415 240 16154 241 15883 242 15625 243 15626 244 15212 245 15255 246 15061 247 14689 248 14345 249 14639 250 2423731