#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i SGDP/SS6004468.hs38DH/SS6004468.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004468.hs38DH/QCmetrics/SS6004468.hs38DH.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 20.556 6.7721 20 4 0 0.043873 0.0011904 0.032477 0.0013102 4.4118e-05 0.078895 0.99725 0.98749 0.95739 0.84049 0.56285 0.25356 0.077639 0.005641 0.0014524 0.00059676 0.0003048 0.00019627 0.00014273 0.00010856 0.99059 20 coverage high_quality_coverage_count 0 418008 1 332042 2 340946 3 376195 4 435292 5 524760 6 653900 7 836849 8 1096383 9 1467315 10 1957127 11 2609397 12 3412371 13 4362245 14 5440173 15 6574413 16 7667476 17 8646158 18 9417617 19 9928711 20 10136346 21 10042592 22 9660634 23 9013063 24 8194735 25 7259848 26 6276630 27 5303602 28 4378709 29 3540851 30 2809389 31 2197115 32 1678018 33 1267376 34 945982 35 696273 36 512532 37 373402 38 272293 39 199500 40 149331 41 112770 42 86802 43 68099 44 54359 45 44730 46 37582 47 32174 48 27582 49 23719 50 20553 51 18668 52 16446 53 14816 54 13082 55 11455 56 10282 57 9082 58 8357 59 7409 60 6635 61 6196 62 5712 63 4866 64 4419 65 4018 66 3682 67 3220 68 2983 69 2680 70 2423 71 2193 72 2034 73 1843 74 1719 75 1485 76 1361 77 1240 78 1155 79 1055 80 1008 81 914 82 873 83 873 84 808 85 738 86 812 87 740 88 694 89 685 90 657 91 625 92 629 93 563 94 488 95 473 96 464 97 447 98 442 99 409 100 387 101 380 102 385 103 399 104 386 105 357 106 342 107 317 108 312 109 323 110 301 111 296 112 274 113 246 114 238 115 233 116 179 117 208 118 232 119 200 120 193 121 182 122 167 123 191 124 161 125 176 126 174 127 181 128 189 129 157 130 161 131 150 132 139 133 133 134 144 135 154 136 146 137 116 138 106 139 115 140 116 141 107 142 120 143 108 144 125 145 106 146 93 147 102 148 109 149 116 150 109 151 103 152 105 153 85 154 104 155 118 156 109 157 99 158 100 159 103 160 81 161 73 162 75 163 82 164 61 165 73 166 69 167 78 168 57 169 71 170 68 171 87 172 87 173 68 174 81 175 77 176 71 177 65 178 62 179 53 180 65 181 42 182 62 183 59 184 62 185 38 186 47 187 34 188 37 189 45 190 48 191 50 192 47 193 39 194 25 195 46 196 31 197 51 198 51 199 57 200 49 201 43 202 31 203 29 204 32 205 33 206 30 207 16 208 24 209 23 210 36 211 30 212 28 213 33 214 26 215 24 216 23 217 27 218 24 219 11 220 27 221 32 222 18 223 22 224 23 225 27 226 22 227 24 228 28 229 22 230 22 231 25 232 27 233 37 234 20 235 23 236 20 237 16 238 17 239 25 240 16 241 21 242 20 243 19 244 23 245 26 246 12 247 18 248 23 249 21 250 1624