#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/SS6004468.hs38DH/SS6004468.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004468.hs38DH/QCmetrics/SS6004468.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 25.505 28.418 21 4 0 0.16085 0.0011023 0.023776 0.00064503 0.33325 0.51962 0.999 0.9943 0.971 0.86172 0.59604 0.30091 0.12887 0.045625 0.034904 0.030031 0.02641 0.02356 0.021247 0.019454 0.99501 23 coverage high_quality_coverage_count 0 23614 1 21449 2 23982 3 28703 4 36895 5 50590 6 69641 7 97969 8 137907 9 194791 10 269575 11 371035 12 497483 13 640668 14 804183 15 975811 16 1140110 17 1285335 18 1402148 19 1476207 20 1507574 21 1489590 22 1426437 23 1334591 24 1217563 25 1086668 26 945899 27 806326 28 671935 29 555624 30 452531 31 363679 32 289085 33 227549 34 178093 35 139207 36 109131 37 85281 38 67544 39 55534 40 45371 41 37691 42 31752 43 27163 44 23593 45 21003 46 18701 47 17340 48 15938 49 14874 50 13797 51 12948 52 12612 53 12202 54 11426 55 11245 56 10679 57 10364 58 10154 59 9732 60 9508 61 9207 62 9168 63 8839 64 8855 65 8607 66 8105 67 8017 68 7810 69 7490 70 7430 71 7464 72 7200 73 7099 74 6888 75 6416 76 6282 77 6363 78 6075 79 6138 80 5940 81 6081 82 5924 83 5807 84 5582 85 5373 86 5262 87 5033 88 4887 89 4781 90 4714 91 4582 92 4428 93 4446 94 4352 95 4270 96 4083 97 3967 98 3820 99 3725 100 3680 101 3484 102 3534 103 3264 104 3013 105 3042 106 3000 107 2850 108 2814 109 2770 110 2730 111 2680 112 2536 113 2468 114 2381 115 2379 116 2306 117 2241 118 2172 119 2129 120 2083 121 2034 122 1897 123 1921 124 1994 125 1898 126 1790 127 1790 128 1783 129 1753 130 1713 131 1727 132 1701 133 1748 134 1650 135 1612 136 1627 137 1601 138 1536 139 1505 140 1409 141 1424 142 1479 143 1433 144 1414 145 1426 146 1424 147 1371 148 1405 149 1317 150 1389 151 1336 152 1324 153 1354 154 1264 155 1253 156 1231 157 1217 158 1225 159 1207 160 1258 161 1210 162 1239 163 1192 164 1163 165 1228 166 1223 167 1225 168 1261 169 1199 170 1149 171 1119 172 1166 173 1095 174 1087 175 1085 176 985 177 1014 178 996 179 1030 180 978 181 1037 182 972 183 927 184 943 185 997 186 961 187 929 188 954 189 1003 190 992 191 974 192 985 193 931 194 943 195 978 196 937 197 990 198 940 199 964 200 987 201 923 202 893 203 880 204 897 205 869 206 889 207 890 208 888 209 897 210 834 211 798 212 842 213 814 214 796 215 748 216 757 217 772 218 742 219 780 220 728 221 738 222 726 223 680 224 689 225 666 226 727 227 698 228 711 229 688 230 650 231 644 232 686 233 729 234 687 235 711 236 713 237 676 238 649 239 712 240 696 241 704 242 658 243 733 244 726 245 699 246 639 247 645 248 640 249 641 250 262233