#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i SGDP/SS6004469.hs38DH/SS6004469.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004469.hs38DH/QCmetrics/SS6004469.hs38DH.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 17.286 6.1386 17 4 0 0.035892 0.0018889 0.050869 0.0029419 4.9376e-05 0.091642 0.99844 0.99047 0.9318 0.6818 0.31351 0.092864 0.024034 0.0045794 0.0017501 0.00080322 0.00043315 0.0002866 0.00019949 0.00014593 0.99054 20 coverage high_quality_coverage_count 0 237022 1 195761 2 244595 3 321843 4 450207 5 665736 6 1016732 7 1550633 8 2326166 9 3365371 10 4656251 11 6137071 12 7687582 13 9154511 14 10392773 15 11262707 16 11692035 17 11635390 18 11145292 19 10287996 20 9174678 21 7933163 22 6661271 23 5448485 24 4345107 25 3395533 26 2598753 27 1956217 28 1454347 29 1065192 30 781325 31 570961 32 422127 33 314582 34 239317 35 184530 36 145858 37 119180 38 98263 39 83187 40 71356 41 61655 42 53998 43 47393 44 42484 45 37870 46 33768 47 30394 48 27102 49 24353 50 22227 51 19671 52 17640 53 16076 54 14599 55 12855 56 11834 57 10605 58 9632 59 8897 60 8294 61 7484 62 6867 63 6372 64 5731 65 5134 66 4700 67 4327 68 3830 69 3555 70 3192 71 2875 72 2594 73 2318 74 2205 75 2045 76 1897 77 1855 78 1654 79 1657 80 1620 81 1531 82 1534 83 1404 84 1369 85 1305 86 1218 87 1181 88 1081 89 1007 90 938 91 930 92 912 93 885 94 788 95 794 96 712 97 731 98 745 99 713 100 647 101 626 102 608 103 601 104 544 105 537 106 486 107 499 108 425 109 431 110 427 111 376 112 389 113 395 114 385 115 352 116 364 117 343 118 341 119 330 120 317 121 307 122 302 123 282 124 305 125 284 126 267 127 255 128 249 129 247 130 201 131 232 132 234 133 247 134 267 135 224 136 210 137 225 138 215 139 176 140 203 141 181 142 169 143 139 144 161 145 136 146 150 147 151 148 130 149 153 150 116 151 120 152 122 153 135 154 117 155 123 156 113 157 116 158 98 159 91 160 95 161 113 162 94 163 102 164 103 165 85 166 99 167 72 168 90 169 74 170 84 171 80 172 65 173 54 174 53 175 57 176 51 177 50 178 48 179 62 180 57 181 51 182 44 183 49 184 50 185 49 186 38 187 46 188 42 189 37 190 46 191 32 192 36 193 27 194 30 195 34 196 39 197 46 198 43 199 39 200 30 201 41 202 37 203 32 204 45 205 34 206 49 207 37 208 44 209 33 210 35 211 34 212 42 213 45 214 37 215 37 216 33 217 34 218 27 219 35 220 29 221 28 222 28 223 35 224 43 225 28 226 24 227 32 228 28 229 24 230 27 231 25 232 32 233 36 234 27 235 27 236 23 237 25 238 23 239 15 240 24 241 21 242 26 243 13 244 33 245 23 246 18 247 16 248 18 249 14 250 1450