#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/SS6004469.hs38DH/SS6004469.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004469.hs38DH/QCmetrics/SS6004469.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 21.686 27.358 17 4 0 0.17359 0.0012196 0.0394 0.0012462 0.38624 0.6017 0.99538 0.98805 0.93133 0.69599 0.35196 0.14262 0.07136 0.043512 0.034383 0.027632 0.023135 0.020392 0.018441 0.017034 0.98782 19 coverage high_quality_coverage_count 0 109266 1 30654 2 33891 3 43761 4 64784 5 97419 6 152533 7 235248 8 351465 9 504086 10 690265 11 902673 12 1126385 13 1331211 14 1511947 15 1638466 16 1698744 17 1687869 18 1615410 19 1491130 20 1331142 21 1159283 22 981299 23 814632 24 661702 25 523996 26 409886 27 317999 28 245422 29 187096 30 144328 31 112049 32 88519 33 70683 34 57099 35 48192 36 40541 37 35621 38 31763 39 29423 40 27082 41 24677 42 23232 43 21865 44 21195 45 20151 46 20293 47 19748 48 18921 49 18617 50 18142 51 17528 52 17279 53 16622 54 16336 55 15876 56 15208 57 14527 58 14236 59 13826 60 13215 61 12628 62 12172 63 11397 64 10696 65 10276 66 9771 67 9210 68 8595 69 8315 70 7913 71 7646 72 7096 73 6764 74 6354 75 6066 76 6186 77 5761 78 5615 79 5436 80 5323 81 5280 82 4891 83 4811 84 4650 85 4484 86 4347 87 4304 88 4061 89 3979 90 3885 91 3738 92 3558 93 3463 94 3324 95 3283 96 3101 97 2990 98 2969 99 2933 100 2721 101 2598 102 2636 103 2597 104 2362 105 2317 106 2239 107 2168 108 2168 109 2080 110 2154 111 2011 112 1928 113 1898 114 1861 115 1856 116 1847 117 1806 118 1799 119 1651 120 1565 121 1600 122 1527 123 1553 124 1521 125 1498 126 1514 127 1477 128 1461 129 1487 130 1457 131 1508 132 1412 133 1447 134 1480 135 1396 136 1497 137 1377 138 1489 139 1382 140 1359 141 1445 142 1417 143 1343 144 1332 145 1338 146 1363 147 1271 148 1234 149 1229 150 1238 151 1238 152 1174 153 1239 154 1203 155 1222 156 1216 157 1270 158 1285 159 1193 160 1182 161 1203 162 1188 163 1187 164 1198 165 1193 166 1179 167 1155 168 1147 169 1191 170 1090 171 1101 172 1079 173 1080 174 1119 175 1101 176 1074 177 1070 178 1039 179 1031 180 1073 181 1065 182 1002 183 999 184 998 185 959 186 990 187 967 188 1006 189 975 190 983 191 972 192 869 193 934 194 846 195 861 196 864 197 794 198 852 199 860 200 827 201 759 202 783 203 759 204 730 205 741 206 705 207 687 208 667 209 683 210 686 211 663 212 660 213 663 214 653 215 660 216 637 217 656 218 656 219 593 220 661 221 632 222 583 223 613 224 603 225 613 226 593 227 610 228 609 229 572 230 595 231 542 232 604 233 580 234 531 235 545 236 491 237 527 238 556 239 566 240 536 241 510 242 478 243 534 244 522 245 492 246 500 247 488 248 544 249 479 250 232619