#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i SGDP/SS6004470.hs38DH/SS6004470.hs38DH.cram --algo AlignmentStat SGDP/SS6004470.hs38DH/QCmetrics/SS6004470.hs38DH.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	621423681	621423681	1.000000	0	613046596	0.986520	60746051324	560030634	55686813350	53474690961	0.000000	0.004550	0.003710	0.000232	100.000000	610682366	0.996143	0	0.499881	0.036185	0.000003	
SECOND_OF_PAIR	621423681	621423681	1.000000	0	610808479	0.982918	60195752492	557309128	55173516701	51926146011	0.000000	0.006278	0.005443	0.000263	100.000000	610682366	0.999794	0	0.500193	0.037589	0.000364	
PAIR	1242847362	1242847362	1.000000	0	1223855075	0.984719	120941803816	1117339762	110860330051	105400836972	0.000000	0.005410	0.004573	0.000248	100.000000	1221364732	0.997965	0	0.500037	0.036886	0.000184