#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i SGDP/SS6004471.hs38DH/SS6004471.hs38DH.cram --algo AlignmentStat SGDP/SS6004471.hs38DH/QCmetrics/SS6004471.hs38DH.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	622409734	622409734	1.000000	0	614186550	0.986788	60788491932	558545476	55542571077	53423158048	0.000000	0.004640	0.003701	0.000258	100.000000	612126011	0.996645	0	0.500127	0.039466	0.000003	
SECOND_OF_PAIR	622409734	622409734	1.000000	0	612263598	0.983699	60277694370	556164228	55070542390	51745489931	0.000000	0.006297	0.005371	0.000261	100.000000	612126011	0.999775	0	0.499976	0.040707	0.000453	
PAIR	1244819468	1244819468	1.000000	0	1226450148	0.985243	121066186302	1114709704	110613113467	105168647979	0.000000	0.005465	0.004533	0.000260	100.000000	1224252022	0.998208	0	0.500052	0.040086	0.000228