#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/SS6004471.hs38DH/SS6004471.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004471.hs38DH/QCmetrics/SS6004471.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 36.641 13.817 36 6 0 0.047783 0.0012525 0.045726 0.0033021 0.022435 0.1205 0.99809 0.99424 0.98926 0.97998 0.95561 0.89013 0.75365 0.34667 0.093477 0.025958 0.01129 0.0069206 0.0051035 0.0040374 0.99597 24 coverage high_quality_coverage_count 0 5235090 1 3119870 2 2628444 3 2451596 4 2393075 5 2421402 6 2508823 7 2658297 8 2890756 9 3201197 10 3612304 11 4173629 12 4889770 13 5820957 14 7006762 15 8512197 16 10417467 17 12802059 18 15788488 19 19445633 20 23868553 21 29105396 22 35201222 23 42072613 24 49683642 25 57864687 26 66450046 27 75141307 28 83710553 29 91897155 30 99343447 31 105832995 32 111129175 33 115045389 34 117424504 35 118230323 36 117476462 37 115271343 38 111684731 39 106913909 40 101176591 41 94673854 42 87604535 43 80253512 44 72755694 45 65348629 46 58210481 47 51419420 48 45065216 49 39260234 50 33949234 51 29224047 52 25046040 53 21390204 54 18218633 55 15506951 56 13195840 57 11235024 58 9586316 59 8188239 60 7021801 61 6045519 62 5212794 63 4521105 64 3937524 65 3438723 66 3021094 67 2662408 68 2355907 69 2089967 70 1859290 71 1657167 72 1482996 73 1328061 74 1195659 75 1077064 76 976422 77 885424 78 807084 79 737865 80 676045 81 624990 82 578153 83 535140 84 499858 85 466859 86 437474 87 412584 88 390344 89 371883 90 353195 91 335633 92 322371 93 308814 94 295216 95 282595 96 272280 97 262154 98 253285 99 244102 100 235405 101 227522 102 218686 103 212153 104 205254 105 199524 106 192565 107 186232 108 179818 109 173413 110 168501 111 163558 112 159279 113 154223 114 149200 115 145112 116 141153 117 136836 118 132637 119 129036 120 125146 121 121235 122 118117 123 114156 124 111027 125 107206 126 103748 127 101297 128 98757 129 95855 130 93972 131 90731 132 88866 133 86184 134 84285 135 81808 136 79884 137 77993 138 76513 139 73904 140 72283 141 70575 142 68776 143 66937 144 65560 145 64786 146 62600 147 61289 148 60140 149 58393 150 57294 151 56031 152 54535 153 53253 154 52798 155 51571 156 50699 157 49177 158 48146 159 47729 160 46629 161 45696 162 45194 163 43867 164 43141 165 42214 166 41630 167 40646 168 39682 169 39513 170 38460 171 37649 172 37324 173 36881 174 36121 175 35496 176 34355 177 34150 178 33317 179 33300 180 32082 181 31876 182 31371 183 31039 184 30345 185 29990 186 29391 187 29039 188 28408 189 27660 190 27676 191 26951 192 26512 193 26293 194 25610 195 24966 196 24822 197 24366 198 24223 199 23924 200 23394 201 22783 202 22931 203 22246 204 21607 205 21803 206 21094 207 20764 208 20659 209 20226 210 20361 211 19658 212 19571 213 19085 214 18890 215 18751 216 18449 217 18094 218 17792 219 17525 220 17357 221 17132 222 16811 223 16818 224 16238 225 15925 226 15953 227 15594 228 15111 229 15209 230 15130 231 14735 232 14544 233 14651 234 14266 235 13933 236 14086 237 13805 238 13559 239 13445 240 13512 241 13192 242 12880 243 12871 244 12568 245 12728 246 12393 247 12146 248 12041 249 11863 250 2303222