#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/SS6004471.hs38DH/SS6004471.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/SS6004471.hs38DH/QCmetrics/SS6004471.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 23.164 29.263 18 4 0 0.14063 0.0011552 0.030519 0.0015155 0.38628 0.56009 0.99887 0.99197 0.9408 0.72741 0.39435 0.16789 0.082549 0.049925 0.042481 0.03816 0.034683 0.031203 0.027496 0.023803 0.99189 21 coverage high_quality_coverage_count 0 26774 1 25607 2 31989 3 42771 4 62557 5 92097 6 139825 7 212933 8 313854 9 450859 10 614456 11 811277 12 1017239 13 1210543 14 1390168 15 1525524 16 1605894 17 1630429 18 1596995 19 1513500 20 1385859 21 1232897 22 1071208 23 908701 24 754125 25 611496 26 489126 27 384809 28 299021 29 232662 30 179004 31 136589 32 105280 33 82855 34 66616 35 54511 36 45784 37 38606 38 33088 39 28778 40 25109 41 22415 42 20168 43 18592 44 17506 45 16072 46 15462 47 14276 48 13723 49 12624 50 12095 51 11547 52 10786 53 10560 54 10204 55 10071 56 9628 57 9280 58 9193 59 8769 60 8639 61 8396 62 8241 63 8416 64 8187 65 8175 66 8316 67 7920 68 7848 69 8041 70 7964 71 8080 72 8195 73 8289 74 8260 75 8183 76 8356 77 8074 78 8396 79 8458 80 8644 81 8614 82 8801 83 8930 84 8825 85 8785 86 8717 87 8887 88 8697 89 8728 90 8968 91 8848 92 8798 93 9006 94 8728 95 8756 96 8540 97 8659 98 8527 99 8467 100 8351 101 8162 102 7930 103 7666 104 7659 105 7631 106 7333 107 7131 108 6872 109 6609 110 6523 111 6259 112 5972 113 5648 114 5562 115 5361 116 5090 117 5037 118 4742 119 4568 120 4513 121 4174 122 4023 123 4129 124 3865 125 3675 126 3540 127 3362 128 3357 129 3312 130 3055 131 3031 132 3018 133 2821 134 2867 135 2804 136 2571 137 2580 138 2501 139 2475 140 2484 141 2332 142 2276 143 2191 144 2289 145 2152 146 2071 147 1978 148 2024 149 1933 150 1935 151 1901 152 1803 153 1840 154 1816 155 1794 156 1694 157 1728 158 1653 159 1660 160 1577 161 1612 162 1515 163 1475 164 1477 165 1401 166 1399 167 1335 168 1350 169 1280 170 1293 171 1385 172 1343 173 1316 174 1213 175 1188 176 1164 177 1154 178 1076 179 1143 180 1192 181 1058 182 1071 183 1029 184 1073 185 1023 186 1036 187 1022 188 1085 189 1032 190 975 191 992 192 915 193 946 194 939 195 871 196 853 197 864 198 872 199 850 200 818 201 806 202 754 203 756 204 767 205 705 206 683 207 730 208 701 209 657 210 703 211 664 212 657 213 607 214 626 215 634 216 621 217 623 218 592 219 578 220 592 221 602 222 652 223 584 224 565 225 598 226 573 227 600 228 588 229 542 230 575 231 528 232 536 233 529 234 568 235 562 236 619 237 554 238 555 239 509 240 522 241 529 242 514 243 543 244 521 245 540 246 527 247 513 248 528 249 481 250 250552